R. Aguayo-Ortiz, P. Meza-Cervantez, R. Castillo, A. Hernández-Campos, L. Dominguez and L. Yépez-Mulia
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引用次数: 9
Abstract
Giardia intestinalis is an intestinal parasite that causes diarrhea in humans and animals worldwide. The enolase of G. intestinalis (GiENO) participates in its glycolysis pathway and is abundantly expressed in the parasite cytosol; however, its localization on the surface of trophozoites and cysts has been demonstrated. Enolases from bacteria and parasites can have different functions and are considered moonlighting proteins, for example, as a cell surface plasminogen receptor. In relation to GiENO, no studies have been performed about its possible participation as a plasminogen receptor. In this work, we employed molecular docking and multiscale molecular dynamics (MD) simulations to explore the possible interactions of human plasminogen (HsPLG) with the open and closed GiENO conformations. Our proposed GiENO plasminogen binding site (PLGBs) was identified at Lys266 based on the sequence comparison with bacterial enolase known to act as a plasminogen receptor. Our docking results performed with multiple MD snapshots of the closed GiENO conformation showed that Lys266 preferentially binds to the K5 domain of HsPLG. On the other hand, open GiENO conformations from all-atom and coarse-grained simulations indicated a high preference of the HsPLG K4 domain for lysine residues 186 and 188. Furthermore, we identified a potential N-glycosylation site of GiENO which suggests a possible explanation for the parasite cell surface localization or host mucin oligosaccharide adhesion mechanism. Our study constitutes the first multiscale computational study to explore the plasminogen receptor function of GiENO for its further consideration as a potential therapeutic target for giardiasis treatment.
贾第鞭毛虫是一种引起全世界人类和动物腹泻的肠道寄生虫。肠烯醇酶(GiENO)参与其糖酵解途径,在寄生虫胞质中大量表达;然而,它在滋养体和包囊表面的定位已被证实。来自细菌和寄生虫的烯醇化酶可以具有不同的功能,被认为是兼职蛋白质,例如,作为细胞表面纤溶酶原受体。关于GiENO,没有关于其可能作为纤溶酶原受体参与的研究。在这项工作中,我们采用分子对接和多尺度分子动力学(MD)模拟来探索人类纤溶酶原(HsPLG)与开放和封闭GiENO构象之间可能的相互作用。通过与已知作为纤溶酶原受体的细菌烯醇化酶的序列比较,我们在Lys266中确定了GiENO纤溶酶原结合位点(plgb)。我们对封闭GiENO构象的多个MD快照进行的对接结果显示,Lys266优先结合HsPLG的K5结构域。另一方面,来自全原子和粗粒度模拟的开放GiENO构象表明HsPLG K4结构域高度偏爱赖氨酸残基186和188。此外,我们发现了一个潜在的GiENO n -糖基化位点,这可能解释了寄生虫细胞表面定位或宿主粘蛋白寡糖粘附机制。我们的研究构成了第一个探索GiENO纤溶酶原受体功能的多尺度计算研究,以进一步考虑其作为贾第虫病治疗的潜在治疗靶点。
期刊介绍:
Molecular Omics publishes molecular level experimental and bioinformatics research in the -omics sciences, including genomics, proteomics, transcriptomics and metabolomics. We will also welcome multidisciplinary papers presenting studies combining different types of omics, or the interface of omics and other fields such as systems biology or chemical biology.