Measurement of local resolution in electron tomography

IF 3.5 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Structural Biology: X Pub Date : 2020-01-01 DOI:10.1016/j.yjsbx.2019.100016
J.L. Vilas , J. Oton , C. Messaoudi , R. Melero , P. Conesa , E. Ramirez-Aportela , J. Mota , M. Martinez , A. Jimenez , R. Marabini , J.M. Carazo , J. Vargas , C.O.S. Sorzano
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引用次数: 11

Abstract

Resolution (global and local) is one of the most reported metrics of quality measurement in Single Particle Analysis (SPA). However, in electron tomography, the situation is different and its computation is not straightforward. Typically, resolution estimation is global and, therefore, reduces the assessment of a whole tomogram to a single number. However, it is known that tomogram quality is spatially variant. Still, up to our knowledge, a method to estimate local quality metrics in tomography is lacking. This work introduces MonoTomo, a method developed to estimate locally in a tomogram the highest reliable frequency component, expressed as a form of local resolution. The fundamentals lie in a local analysis of the density map via monogenic signals, which, in analogy to MonoRes, allows for local estimations. Results with experimental data show that the local resolution range that MonoTomo casts agrees with reported resolution values for experimental data sets, with the advantage of providing a local estimation. A range of applications of MonoTomo are suggested for further exploration.

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电子断层扫描局部分辨率的测量
分辨率(全局和局部)是单粒子分析(SPA)中报道最多的质量测量指标之一。然而,在电子断层扫描中,情况是不同的,它的计算并不简单。通常,分辨率估计是全局的,因此,将整个层析图的评估减少到单个数字。然而,已知层析成像质量在空间上是不同的。尽管如此,据我们所知,缺乏一种估计断层扫描局部质量指标的方法。这项工作介绍了MonoTomo,这是一种用于估计断层图中最高可靠频率分量的方法,以局部分辨率的形式表示。其基本原理在于通过单基因信号对密度图进行局部分析,这与单基因信号类似,允许进行局部估计。实验数据的结果表明,MonoTomo投射的局部分辨率范围与实验数据集的报告分辨率值一致,具有局部估计的优势。提出了MonoTomo的一系列应用,供进一步探索。
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来源期刊
Journal of Structural Biology: X
Journal of Structural Biology: X Biochemistry, Genetics and Molecular Biology-Structural Biology
CiteScore
6.50
自引率
0.00%
发文量
20
审稿时长
62 days
期刊最新文献
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