Monosynaptic inference via finely-timed spikes.

IF 1.5 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Computational Neuroscience Pub Date : 2021-05-01 Epub Date: 2021-01-28 DOI:10.1007/s10827-020-00770-5
Jonathan Platkiewicz, Zachary Saccomano, Sam McKenzie, Daniel English, Asohan Amarasingham
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Abstract

Observations of finely-timed spike relationships in population recordings have been used to support partial reconstruction of neural microcircuit diagrams. In this approach, fine-timescale components of paired spike train interactions are isolated and subsequently attributed to synaptic parameters. Recent perturbation studies strengthen the case for such an inference, yet the complete set of measurements needed to calibrate statistical models is unavailable. To address this gap, we study features of pairwise spiking in a large-scale in vivo dataset where presynaptic neurons were explicitly decoupled from network activity by juxtacellular stimulation. We then construct biophysical models of paired spike trains to reproduce the observed phenomenology of in vivo monosynaptic interactions, including both fine-timescale spike-spike correlations and firing irregularity. A key characteristic of these models is that the paired neurons are coupled by rapidly-fluctuating background inputs. We quantify a monosynapse's causal effect by comparing the postsynaptic train with its counterfactual, when the monosynapse is removed. Subsequently, we develop statistical techniques for estimating this causal effect from the pre- and post-synaptic spike trains. A particular focus is the justification and application of a nonparametric separation of timescale principle to implement synaptic inference. Using simulated data generated from the biophysical models, we characterize the regimes in which the estimators accurately identify the monosynaptic effect. A secondary goal is to initiate a critical exploration of neurostatistical assumptions in terms of biophysical mechanisms, particularly with regards to the challenging but arguably fundamental issue of fast, unobservable nonstationarities in background dynamics.

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通过微调尖峰进行单突触推断
在群体记录中观察到的精细时间尖峰关系已被用于支持神经微电路图的部分重建。在这种方法中,成对尖峰序列相互作用的精细时间尺度成分被分离出来,随后归因于突触参数。最近的扰动研究加强了这种推断的合理性,但校准统计模型所需的全套测量数据却无法获得。为了填补这一空白,我们研究了大规模体内数据集中成对尖峰突触的特征,在该数据集中,突触前神经元通过并细胞刺激与网络活动明确解耦。然后,我们构建了成对尖峰序列的生物物理模型,以重现观察到的体内单突触相互作用现象,包括细时间尺度的尖峰-尖峰相关性和点燃不规则性。这些模型的一个关键特征是,配对神经元通过快速波动的背景输入耦合。我们通过比较突触后序列和它的反事实(当单突触被移除时)来量化单突触的因果效应。随后,我们开发了统计技术,用于从突触前和突触后的尖峰序列中估计这种因果效应。其中一个重点是证明和应用非参数时标分离原理来实现突触推断。利用生物物理模型产生的模拟数据,我们描述了估计器准确识别单突触效应的情况。我们的第二个目标是根据生物物理机制对神经统计假设进行批判性探索,特别是在背景动态中快速、不可观测的非平稳性这一具有挑战性但可以说是根本性的问题上。
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来源期刊
CiteScore
2.00
自引率
8.30%
发文量
32
审稿时长
3 months
期刊介绍: The Journal of Computational Neuroscience provides a forum for papers that fit the interface between computational and experimental work in the neurosciences. The Journal of Computational Neuroscience publishes full length original papers, rapid communications and review articles describing theoretical and experimental work relevant to computations in the brain and nervous system. Papers that combine theoretical and experimental work are especially encouraged. Primarily theoretical papers should deal with issues of obvious relevance to biological nervous systems. Experimental papers should have implications for the computational function of the nervous system, and may report results using any of a variety of approaches including anatomy, electrophysiology, biophysics, imaging, and molecular biology. Papers investigating the physiological mechanisms underlying pathologies of the nervous system, or papers that report novel technologies of interest to researchers in computational neuroscience, including advances in neural data analysis methods yielding insights into the function of the nervous system, are also welcomed (in this case, methodological papers should include an application of the new method, exemplifying the insights that it yields).It is anticipated that all levels of analysis from cognitive to cellular will be represented in the Journal of Computational Neuroscience.
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