High-accuracy quantitative principle of a new compact digital PCR equipment: Lab On An Array.

Q2 Agricultural and Biological Sciences Genomics and Informatics Pub Date : 2021-09-01 Epub Date: 2021-09-30 DOI:10.5808/gi.21035
Haeun Lee, Cherl-Joon Lee, Dong Hee Kim, Chun-Sung Cho, Wonseok Shin, Kyudong Han
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引用次数: 3

Abstract

Digital PCR (dPCR) is the third-generation PCR that enables real-time absolute quantification without reference materials. Recently, global diagnosis companies have developed new dPCR equipment. In line with the development, the Lab On An Array (LOAA) dPCR analyzer (Optolane) was launched last year. The LOAA dPCR is a semiconductor chip-based separation PCR type equipment. The LOAA dPCR includes Micro Electro Mechanical System that can be injected by partitioning the target gene into 56 to 20,000 wells. The amount of target gene per wells is digitized to 0 or 1 as the number of well gradually increases to 20,000 wells because its principle follows Poisson distribution, which allows the LOAA dPCR to perform precise absolute quantification. LOAA determined region of interest first prior to dPCR operation. To exclude invalid wells for the quantification, the LOAA dPCR has applied various filtering methods using brightness, slope, baseline, and noise filters. As the coronavirus disease 2019 has now spread around the world, needs for diagnostic equipment of point of care testing (POCT) are increasing. The LOAA dPCR is expected to be suitable for POCT diagnosis due to its compact size and high accuracy. Here, we describe the quantitative principle of the LOAA dPCR and suggest that it can be applied to various fields.

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一种新型紧凑型数字PCR设备的高精度定量原理:阵列实验室。
数字PCR (Digital PCR, dPCR)是第三代PCR技术,可以在没有参比物的情况下进行实时绝对定量。最近,全球诊断公司开发了新的dPCR设备。随着技术的发展,去年推出了阵列实验室(LOAA) dPCR分析仪(Optolane)。LOAA dPCR是一种基于半导体芯片的分离PCR型设备。LOAA dPCR包括微型机电系统,可以通过将目标基因划分到56至20,000个孔中进行注射。随着井数逐渐增加到2万口,每井的靶基因数量被数字化为0或1,因为其原理遵循泊松分布,这使得LOAA dPCR可以进行精确的绝对定量。在dPCR操作之前,LOAA首先确定感兴趣的区域。为了排除无效井进行定量,LOAA dPCR应用了各种过滤方法,包括亮度、斜率、基线和噪声滤波器。随着2019年冠状病毒病在全球蔓延,对护理点检测(POCT)诊断设备的需求正在增加。LOAA dPCR由于其体积小,准确度高,有望用于POCT的诊断。在这里,我们描述了LOAA dPCR的定量原理,并建议它可以应用于各个领域。
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来源期刊
Genomics and Informatics
Genomics and Informatics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
1.90
自引率
0.00%
发文量
0
审稿时长
12 weeks
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