{"title":"Pattern formation revisited within nonequilibrium thermodynamics: Burgers'-type equation.","authors":"Václav Klika","doi":"10.1007/s00422-021-00908-3","DOIUrl":null,"url":null,"abstract":"<p><p>We revisit the description of reaction-diffusion phenomena within nonequilibrium thermodynamics and investigate the role of a nonstandard splitting of the entropy balance into the entropy production and the divergence of entropy flux. As previously reported by Pavelka et al. (Int J Eng Sci 78:192-217, 2014), a new term is identified following from the kinetic energy of diffusion. This newly appearing term acts as a thermodynamic force driving the reaction kinetics. Using the standard constitutive relations within the linear nonequilibrium thermodynamics, the governing equations for a reaction-diffusion problem in a two-species system are derived. They turn out to be linked to Burgers' equation. It is shown that the onset of stability is not altered, but a non-periodic pattern can emerge. The latter follows from the relation of the governing equation to Burger's equation with a source term. Hence, transients formed by glued and merging parabolic profiles are expected to appear at least in certain parameter regimes. We explore the significance of this effect and observe that for a comparable magnitude of the diffusion and of the new term stemming from the kinetic energy of diffusion, the solution is expected to be linked to the saw-tooth like solution to Burger's equation rather than to the eigenmodes of the Laplacian. We conclude that the reaction-diffusion model proposed by Turing is robust to the addition of this effect of the kinetic energy of diffusion, at least when this new term is sufficiently small. As the governing equations can be rewritten into the classical reaction-diffusion problem but with reaction kinetics outside of the classical law of mass action, the analysis presented in this study suggests that a yet richer behaviour of the classical reaction-diffusion problems can be expected, if nonstandard reaction kinetics are considered.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":null,"pages":null},"PeriodicalIF":1.7000,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biological Cybernetics","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s00422-021-00908-3","RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/11/10 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"COMPUTER SCIENCE, CYBERNETICS","Score":null,"Total":0}
引用次数: 1
Abstract
We revisit the description of reaction-diffusion phenomena within nonequilibrium thermodynamics and investigate the role of a nonstandard splitting of the entropy balance into the entropy production and the divergence of entropy flux. As previously reported by Pavelka et al. (Int J Eng Sci 78:192-217, 2014), a new term is identified following from the kinetic energy of diffusion. This newly appearing term acts as a thermodynamic force driving the reaction kinetics. Using the standard constitutive relations within the linear nonequilibrium thermodynamics, the governing equations for a reaction-diffusion problem in a two-species system are derived. They turn out to be linked to Burgers' equation. It is shown that the onset of stability is not altered, but a non-periodic pattern can emerge. The latter follows from the relation of the governing equation to Burger's equation with a source term. Hence, transients formed by glued and merging parabolic profiles are expected to appear at least in certain parameter regimes. We explore the significance of this effect and observe that for a comparable magnitude of the diffusion and of the new term stemming from the kinetic energy of diffusion, the solution is expected to be linked to the saw-tooth like solution to Burger's equation rather than to the eigenmodes of the Laplacian. We conclude that the reaction-diffusion model proposed by Turing is robust to the addition of this effect of the kinetic energy of diffusion, at least when this new term is sufficiently small. As the governing equations can be rewritten into the classical reaction-diffusion problem but with reaction kinetics outside of the classical law of mass action, the analysis presented in this study suggests that a yet richer behaviour of the classical reaction-diffusion problems can be expected, if nonstandard reaction kinetics are considered.
我们重新审视了非平衡热力学中反应扩散现象的描述,并研究了熵平衡的非标准分裂在熵产生和熵通量散度中的作用。Pavelka et al. (Int J Eng Sci 78:192-217, 2014)从扩散动能中提出了一个新的术语。这个新出现的项作为一种热力学力来驱动反应动力学。利用线性非平衡热力学中的标准本构关系,导出了两种系统反应扩散问题的控制方程。结果证明它们与伯格方程有关。结果表明,稳定性的开始没有改变,但可以出现非周期性模式。后者由控制方程与带源项的伯格方程的关系得出。因此,由粘接和合并抛物线轮廓形成的瞬态预计至少在某些参数范围内出现。我们探讨了这一效应的意义,并观察到,对于扩散的相当大小和由扩散动能产生的新项,其解有望与伯格方程的锯齿状解联系起来,而不是与拉普拉斯方程的本征模态联系起来。我们得出结论,图灵提出的反应-扩散模型对于加入扩散动能的影响是稳健的,至少当这个新项足够小时是如此。由于控制方程可以改写为经典的反应扩散问题,但反应动力学在经典质量作用定律之外,本研究提出的分析表明,如果考虑非标准反应动力学,可以预期经典反应扩散问题的更丰富的行为。
期刊介绍:
Biological Cybernetics is an interdisciplinary medium for theoretical and application-oriented aspects of information processing in organisms, including sensory, motor, cognitive, and ecological phenomena. Topics covered include: mathematical modeling of biological systems; computational, theoretical or engineering studies with relevance for understanding biological information processing; and artificial implementation of biological information processing and self-organizing principles. Under the main aspects of performance and function of systems, emphasis is laid on communication between life sciences and technical/theoretical disciplines.