A toolbox for improving the workflow of NMR crystallography

IF 2.4 3区 化学 Q4 CHEMISTRY, PHYSICAL Solid state nuclear magnetic resonance Pub Date : 2021-12-01 DOI:10.1016/j.ssnmr.2021.101761
Patrick M.J. Szell , Sten O. Nilsson Lill , Helen Blade , Steven P. Brown , Leslie P. Hughes
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引用次数: 3

Abstract

NMR crystallography is a powerful tool with applications in structural characterization and crystal structure verification, to name two. However, applying this tool presents several challenges, especially for industrial users, in terms of consistency, workflow, time consumption, and the requirement for a high level of understanding of experimental solid-state NMR and GIPAW-DFT calculations. Here, we have developed a series of fully parameterized scripts for use in Materials Studio and TopSpin, based on the .magres file format, with a focus on organic molecules (e.g. pharmaceuticals), improving efficiency, robustness, and workflow. We separate these tools into three major categories: performing the DFT calculations, extracting & visualizing the results, and crystallographic modelling. These scripts will rapidly submit fully parameterized CASTEP jobs, extract data from the calculations, assist in visualizing the results, and expedite the process of structural modelling. Accompanied with these tools is a description on their functionality, documentation on how to get started and use the scripts, and links to video tutorials for guiding new users. Through the use of these tools, we hope to facilitate NMR crystallography and to harmonize the process across users.

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用于改进核磁共振晶体学工作流程的工具箱
核磁共振晶体学是一种强大的工具,在结构表征和晶体结构验证等方面都有应用。然而,在一致性、工作流程、时间消耗以及对实验固态NMR和GIPAW-DFT计算的高水平理解要求方面,应用该工具存在一些挑战,特别是对工业用户而言。在这里,我们开发了一系列完全参数化的脚本,用于材料工作室和TopSpin,基于。magres文件格式,重点关注有机分子(例如药物),提高效率,稳健性和工作流程。我们将这些工具分为三大类:执行DFT计算,提取&可视化结果,以及晶体学建模。这些脚本将快速提交完全参数化的CASTEP作业,从计算中提取数据,协助可视化结果,并加快结构建模过程。随附这些工具的功能说明,如何开始和使用脚本的文档,以及指导新用户的视频教程链接。通过使用这些工具,我们希望促进核磁共振晶体学,并协调用户之间的过程。
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来源期刊
CiteScore
5.30
自引率
9.40%
发文量
42
审稿时长
72 days
期刊介绍: The journal Solid State Nuclear Magnetic Resonance publishes original manuscripts of high scientific quality dealing with all experimental and theoretical aspects of solid state NMR. This includes advances in instrumentation, development of new experimental techniques and methodology, new theoretical insights, new data processing and simulation methods, and original applications of established or novel methods to scientific problems.
期刊最新文献
On the optimal spectral resolution in quadrupole central transition NMR at ultrahigh magnetic fields J couplings in the solid state from direct energy computations Editorial Board Outside Front Cover Impact of shared facilities in advancing solid-state NMR research: 2025 edition
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