Establishment of a Novel Prognostic Prediction Model for Gastric Cancer Based on Necroptosis-Related Genes.

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2022-09-15 eCollection Date: 2022-01-01 DOI:10.3389/pore.2022.1610641
Zhong-Zhong Zhu, Guanglin Zhang, Jianping Liu
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Abstract

Background: Necroptosis plays a crucial role in the progression of multiple types of cancer. However, the role of necroptosis in gastric cancer (GC) remains unclear. The aim of this study is to establish a necroptosis-related prediction model, which could provide information for treatment monitoring. Methods: The TCGA-STAD cohort was employed to establish a prognostic prediction signature and the GEO dataset was employed for external validation. The correlation between the risk score and the immune landscape, tumor mutational burden (TMB), microsatellite instability (MSI), as well as therapeutic responses of different therapies were analyzed. Results: We constructed a prognostic model based on necroptosis-associated genes (NAGs), and its favorable predictive ability was confirmed in an external cohort. The risk score was confirmed as an independent determinant, and a nomogram was further established for prognosis. A high score implies higher tumor immune microenvironment (TIME) scores and more significant TIME cell infiltration. High-risk patients presented with lower TMB, and low-TMB patients had worse overall survival (OS). Meanwhile, Low-risk scores are characterized by MSI-high (MSI-H), lower Tumor Immune Dysfunction and Exclusion (TIDE) score, and higher immunogenicity in immunophenoscore (IPS) analysis. Conclusion: The developed NAG score provides a novel and effective method for predicting the outcome of GC as well as potential targets for further research.

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基于坏死相关基因的胃癌预后预测新模型的建立
背景:坏死性上睑下垂在多种癌症的发展中起着至关重要的作用。然而,坏死性上睑下垂在胃癌(GC)中的作用尚不清楚。本研究旨在建立坏死相关的预测模型,为治疗监测提供信息。方法:采用TCGA-STAD队列建立预后预测签名,采用GEO数据集进行外部验证。分析风险评分与免疫景观、肿瘤突变负荷(tumor mutational burden, TMB)、微卫星不稳定性(microsatellite instability, MSI)及不同治疗方案疗效的相关性。结果:我们构建了一个基于坏死相关基因(nag)的预后模型,并在外部队列中证实了其良好的预测能力。确认风险评分为独立决定因素,并进一步建立预后的nomogram。肿瘤免疫微环境(TIME)评分越高,TIME细胞浸润越明显。高危患者TMB较低,低TMB患者总生存期(OS)较差。同时,低风险评分的特点是msi -高(MSI-H),肿瘤免疫功能障碍和排斥(TIDE)评分较低,免疫表型评分(IPS)分析的免疫原性较高。结论:建立的NAG评分为预测GC结果提供了一种新颖有效的方法,并为进一步研究提供了潜在的靶点。
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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