Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles

IF 0.9 4区 地球科学 Q4 GEOCHEMISTRY & GEOPHYSICS Geochemical Transactions Pub Date : 2018-03-01 DOI:10.1186/s12932-018-0053-8
James D. Kubicki, Nadine Kabengi, Maria Chrysochoou, Nefeli Bompoti
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引用次数: 27

Abstract

Density functional theory (DFT) calculations were performed on a model of a ferrihydrite nanoparticle interacting with chromate (\( {\text{CrO}}_{4}^{2 - } \)) in water. Two configurations each of monodentate and bidentate adsorbed chromate as well as an outer-sphere and a dissolved bichromate (\( {\text{HCrO}}_{4}^{ - } \)) were simulated. In addition to the 3-D periodic planewave DFT models, molecular clusters were extracted from the energy-minimized structures. Calculated interatomic distances from the periodic and cluster models compare favorably with Extended X-ray Absorption Fine Structure spectroscopy values, with larger discrepancies seen for the clusters due to over-relaxation of the model substrate. Relative potential energies were derived from the periodic models and Gibbs free energies from the cluster models. A key result is that the bidentate binuclear configuration is the lowest in potential energy in the periodic models followed by the outer-sphere complex. This result is consistent with observations of the predominance of bidentate chromate adsorption on ferrihydrite under conditions of high surface coverage (Johnston Environ Sci Technol 46:5851–5858, 2012). Cluster models were also used to perform frequency analyses for comparison with observed ATR FTIR spectra. Calculated frequencies on monodentate, bidentate binuclear, and outer-sphere complexes each have infrared (IR)-active modes consistent with experiment. Inconsistencies between the thermodynamic predictions and the IR-frequency analysis suggest that the 3-D periodic models are not capturing key components of the system that influence the adsorption equilibria under varying conditions of pH, ionic strength and electrolyte composition. Model equilibration via molecular dynamics (MD) simulations is necessary to escape metastable states created during DFT energy minimizations based on the initial classical force field MD-derived starting configurations.

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铬酸盐在水合铁纳米颗粒上吸附的密度泛函理论模型
密度泛函理论(DFT)计算了水氧化铁纳米颗粒与铬酸盐(\( {\text{CrO}}_{4}^{2 - } \))在水中相互作用的模型。模拟了单齿和双齿吸附铬酸盐的两种构型,以及外球和溶解重铬酸盐(\( {\text{HCrO}}_{4}^{ - } \))。除了三维周期平面波DFT模型外,还从能量最小化结构中提取了分子团簇。从周期模型和团簇模型计算的原子间距离与扩展x射线吸收精细结构光谱值比较有利,由于模型衬底的过度松弛,团簇的差异较大。由周期模型推导出相对势能,由簇模型推导出吉布斯自由能。一个关键的结果是,在周期模型中,双齿双核构型的势能最低,其次是外球复合物。这一结果与高表面覆盖率条件下双齿铬酸盐在水合铁上的优势吸附的观察结果一致(Johnston Environ Sci technology 46:58 851 - 5858, 2012)。聚类模型还用于进行频率分析,以便与观测到的ATR FTIR光谱进行比较。单齿、双齿双核和外球面配合物的计算频率均具有与实验一致的红外(IR)活性模式。热力学预测与红外频率分析之间的不一致表明,三维周期模型没有捕捉到在不同pH、离子强度和电解质组成条件下影响吸附平衡的系统关键成分。通过分子动力学(MD)模拟的模型平衡是必要的,以摆脱在基于初始经典力场MD衍生的起始构型的DFT能量最小化过程中产生的亚稳态。
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来源期刊
Geochemical Transactions
Geochemical Transactions 地学-地球化学与地球物理
CiteScore
3.70
自引率
4.30%
发文量
2
审稿时长
>12 weeks
期刊介绍: Geochemical Transactions publishes high-quality research in all areas of chemistry as it relates to materials and processes occurring in terrestrial and extraterrestrial systems.
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