Double enhanced residual network for biological image denoising

IF 1 4区 生物学 Q4 DEVELOPMENTAL BIOLOGY Gene Expression Patterns Pub Date : 2022-09-01 DOI:10.1016/j.gep.2022.119270
Bo Fu , Xiangyi Zhang , Liyan Wang , Yonggong Ren , Dang N.H. Thanh
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引用次数: 2

Abstract

With the achievements of deep learning, applications of deep convolutional neural networks for the image denoising problem have been widely studied. However, these methods are typically limited by GPU in terms of network layers and other aspects. This paper proposes a multi-level network that can efficiently utilize GPU memory, named Double Enhanced Residual Network (DERNet), for biological-image denoising. The network consists of two sub-networks, and U-Net inspires the basic structure. For each sub-network, the encoder-decoder hierarchical structure is used for down-scaling and up-scaling feature maps so that GPU can yield large receptive fields. In the encoder process, the convolution layers are used for down-sampling to obtain image information, and residual blocks are superimposed for preliminary feature extraction. In the operation of the decoder, transposed convolution layers have the capability to up-sampling and combine with the Residual Dense Instance Normalization (RDIN) block that we propose, extract deep features and restore image details. Finally, both qualitative experiments and visual effects demonstrate the effectiveness of our proposed algorithm.

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双增强残差网络用于生物图像去噪
随着深度学习的发展,深度卷积神经网络在图像去噪中的应用得到了广泛的研究。然而,这些方法通常在网络层和其他方面受到GPU的限制。本文提出了一种有效利用GPU内存的多级网络——双增强残差网络(DERNet),用于生物图像去噪。该网络由两个子网组成,U-Net激发了基本结构。对于每个子网络,采用编码器-解码器分层结构对特征映射进行降尺度和升尺度处理,使GPU能够产生较大的接收域。在编码器过程中,使用卷积层进行下采样以获取图像信息,并叠加残差块进行初步特征提取。在解码器的操作中,转置卷积层具有上采样的能力,并与我们提出的残差密集实例归一化(RDIN)块相结合,提取深度特征并恢复图像细节。最后,定性实验和视觉效果验证了算法的有效性。
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来源期刊
Gene Expression Patterns
Gene Expression Patterns 生物-发育生物学
CiteScore
2.30
自引率
0.00%
发文量
42
审稿时长
35 days
期刊介绍: Gene Expression Patterns is devoted to the rapid publication of high quality studies of gene expression in development. Studies using cell culture are also suitable if clearly relevant to development, e.g., analysis of key regulatory genes or of gene sets in the maintenance or differentiation of stem cells. Key areas of interest include: -In-situ studies such as expression patterns of important or interesting genes at all levels, including transcription and protein expression -Temporal studies of large gene sets during development -Transgenic studies to study cell lineage in tissue formation
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Outside Front Cover Editorial Board A great diversity of ROBO4 expression and regulations identified by data mining and transgene mice The expression pattern of Wnt6, Wnt10A, and HOXA13 during regenerating tails of Gekko Japonicus Outside Front Cover
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