Draft Genomes of Six Wild Poisonous Mushrooms.

Journal of Genomics Pub Date : 2022-08-01 eCollection Date: 2022-01-01 DOI:10.7150/jgen.75652
Sittiporn Parnmen, Nattakarn Nooron, Sujitra Sikaphan, Chutimon Uttawichai, Dutsadee Polputpisatkul, Sriprapa Phatsarapongkul, Rungsaeng Chankunasuka, Unchalee Nitma, Chidkamon Thunkhamrak, Nisakorn Palakul, Khwanruan Naksuwankul, Onanong Pringsulaka, Achariya Rangsiruji
{"title":"Draft Genomes of Six Wild Poisonous Mushrooms.","authors":"Sittiporn Parnmen,&nbsp;Nattakarn Nooron,&nbsp;Sujitra Sikaphan,&nbsp;Chutimon Uttawichai,&nbsp;Dutsadee Polputpisatkul,&nbsp;Sriprapa Phatsarapongkul,&nbsp;Rungsaeng Chankunasuka,&nbsp;Unchalee Nitma,&nbsp;Chidkamon Thunkhamrak,&nbsp;Nisakorn Palakul,&nbsp;Khwanruan Naksuwankul,&nbsp;Onanong Pringsulaka,&nbsp;Achariya Rangsiruji","doi":"10.7150/jgen.75652","DOIUrl":null,"url":null,"abstract":"<p><p>Foodborne illnesses caused by wild mushroom poisoning occur globally and have led to food safety concerns. Here, we reported <i>de novo</i> genome assemblies of the six most commonly encountered toxic mushrooms in Thailand. These comprised <i>Amanita brunneitoxicaria</i>, <i>Cantharocybe virosa</i>, <i>Chlorophyllum molybdites</i>, <i>Entoloma mastoideum</i>, <i>Pseudosperma</i> sp. and <i>Russula subnigricans</i>. The nuclear genome sizes of these species ranged from 40 to 77 Mb, with the number of predicted genes ranging from 5,375 to 14,099. The mitogenome sizes varied from 41,555 to 78,907 bp. The resulting draft genomes of these poisonous mushrooms provide insights into toxin-related genes that may be used to establish genetic markers for monitoring mushroom poisoning outbreaks.</p>","PeriodicalId":15834,"journal":{"name":"Journal of Genomics","volume":" ","pages":"57-60"},"PeriodicalIF":0.0000,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9379371/pdf/","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.7150/jgen.75652","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

Abstract

Foodborne illnesses caused by wild mushroom poisoning occur globally and have led to food safety concerns. Here, we reported de novo genome assemblies of the six most commonly encountered toxic mushrooms in Thailand. These comprised Amanita brunneitoxicaria, Cantharocybe virosa, Chlorophyllum molybdites, Entoloma mastoideum, Pseudosperma sp. and Russula subnigricans. The nuclear genome sizes of these species ranged from 40 to 77 Mb, with the number of predicted genes ranging from 5,375 to 14,099. The mitogenome sizes varied from 41,555 to 78,907 bp. The resulting draft genomes of these poisonous mushrooms provide insights into toxin-related genes that may be used to establish genetic markers for monitoring mushroom poisoning outbreaks.

Abstract Image

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
六种野生毒蘑菇的基因组草图。
野生蘑菇中毒引起的食源性疾病在全球范围内发生,并引起了食品安全问题。在这里,我们报道了泰国六种最常见的有毒蘑菇的从头基因组组装。其中包括褐毒伞菌、斑蝥藻病毒、钼绿藻、乳突肠虫、伪精子和黑穗病菌。这些物种的核基因组大小在40 ~ 77 Mb之间,预测基因数量在5,375 ~ 14,099之间。有丝分裂基因组大小从41,555到78,907 bp不等。由此产生的这些有毒蘑菇的基因组草图提供了对毒素相关基因的见解,可用于建立监测蘑菇中毒爆发的遗传标记。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
11
审稿时长
12 weeks
期刊介绍: Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
期刊最新文献
Draft genomes and assemblies of the ectomycorrhizal basidiomycetes Scleroderma citrinum hr and S. yunnanense jo associated with chestnut trees. COMT and MTHFR Genetic Variants Combined Effects on Adolescent Idiopathic Scoliosis Progression. First Report and Genome Resource of Monilinia vaccinii-corymbosi, causal agent of Mummy Berry Disease of Black Huckleberry (Vaccinium membranaceum). The impact of Elaeagnus angustifolia root exudates on Parafrankia soli NRRL B-16219 exoproteome. Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1