Toward transparent taxonomy: an interactive web-tool for evaluating competing taxonomic arrangements

IF 3.9 2区 生物学 Q1 EVOLUTIONARY BIOLOGY Cladistics Pub Date : 2023-10-12 DOI:10.1111/cla.12563
Oksana V. Vernygora, Felix A. H. Sperling, Julian R. Dupuis
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Abstract

Informative and consistent taxonomy above the species level is essential to communication about evolution, biodiversity and conservation, and yet the practice of taxonomy is considered opaque and subjective by non-taxonomist scientists and the public alike. While various proposals have tried to make the basis for the ranking and inclusiveness of taxa more transparent and objective, widespread adoption of these ideas has lagged. Here, we present TaxonomR, an interactive online decision-support tool to evaluate alternative taxonomic classifications. This tool implements an approach that quantifies the criteria commonly used in taxonomic treatments and allows the user to interactively manipulate weightings for different criteria to compare scores for taxonomic groupings under those weights. We use the butterfly taxon Argynnis to demonstrate how different weightings applied to common taxonomic criteria result in fundamentally different genus-level classifications that are predominantly used in different continents and geographic regions. These differences are objectively compared and quantified using TaxonomR to evaluate the kinds of criteria that have been emphasized in earlier classifications, and the nature of the support for current alternative taxonomic arrangements. The main role of TaxonomR is to make taxonomic decisions transparent via an explicit prioritization scheme. TaxonomR is not a prescriptive application. Rather, it aims to be a tool for facilitating our understanding of alternative taxonomic classifications that can, in turn, potentially support global harmony in biodiversity assessments through evidence-based discussion and community-wide resolution of historically entrenched taxonomic tensions.

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走向透明分类法:一个用于评估相互竞争的分类安排的交互式网络工具。
物种层面上的信息性和一致性分类学对于进化、生物多样性和保护的交流至关重要,但非分类学家科学家和公众都认为分类学的实践是不透明和主观的。虽然各种提案都试图使分类群的排名和包容性的基础更加透明和客观,但这些想法的广泛采用却滞后了。在这里,我们介绍了TaxonomR,一个交互式在线决策支持工具,用于评估替代分类。该工具实现了一种方法,该方法量化了分类处理中常用的标准,并允许用户交互式地操纵不同标准的权重,以比较在这些权重下分类分组的得分。我们使用蝴蝶分类单元Argynnis来证明应用于共同分类标准的不同权重如何导致主要在不同大陆和地理区域使用的根本不同的属级分类。使用TaxonomR对这些差异进行客观比较和量化,以评估早期分类中强调的标准种类,以及对当前替代分类安排的支持性质。TaxonomR的主要作用是通过明确的优先级方案使分类决策透明。TaxonomR不是一个规定性的应用程序。相反,它旨在成为一种工具,促进我们对替代分类的理解,反过来,通过循证讨论和社区范围内解决历史上根深蒂固的分类紧张关系,有可能支持生物多样性评估中的全球和谐。
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来源期刊
Cladistics
Cladistics 生物-进化生物学
CiteScore
8.60
自引率
5.60%
发文量
34
期刊介绍: Cladistics publishes high quality research papers on systematics, encouraging debate on all aspects of the field, from philosophy, theory and methodology to empirical studies and applications in biogeography, coevolution, conservation biology, ontogeny, genomics and paleontology. Cladistics is read by scientists working in the research fields of evolution, systematics and integrative biology and enjoys a consistently high position in the ISI® rankings for evolutionary biology.
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Issue Information Incomplete barriers to heterospecific mating among Somatochlora species (Odonata: Corduliidae) as revealed in multi-gene phylogenies Rethinking spatial history: envisioning a mechanistic historical biogeography Robust phylogenomics settles controversies of classification and reveals evolution of male embolic complex of the Laufeia clade (Araneae, Salticidae, Euophryini) Issue Information
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