Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans.

IF 8.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Systems Biology Pub Date : 2023-11-09 Epub Date: 2023-10-18 DOI:10.15252/msb.202311835
David J Jordan, Eric A Miska
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Abstract

How do the same mechanisms that faithfully regenerate complex developmental programmes in spite of environmental and genetic perturbations also allow responsiveness to environmental signals, adaptation and genetic evolution? Using the nematode Caenorhabditis elegans as a model, we explore the phenotypic space of growth and development in various genetic and environmental contexts. Our data are growth curves and developmental parameters obtained by automated microscopy. Using these, we show that among the traits that make up the developmental space, correlations within a particular context are predictive of correlations among different contexts. Furthermore, we find that the developmental variability of this animal can be captured on a relatively low-dimensional phenotypic manifold and that on this manifold, genetic and environmental contributions to plasticity can be deconvolved independently. Our perspective offers a new way of understanding the relationship between robustness and flexibility in complex systems, suggesting that projection and concentration of dimension can naturally align these forces as complementary rather than competing.

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秀丽隐杆线虫发育多样性的渠道化和可塑性。
尽管环境和基因受到干扰,但忠实地再生复杂发展方案的机制如何也能对环境信号、适应和基因进化做出反应?以秀丽隐杆线虫为模型,我们探索了不同遗传和环境背景下生长发育的表型空间。我们的数据是通过自动显微镜获得的生长曲线和发育参数。利用这些,我们表明,在构成发展空间的特征中,特定语境中的相关性可以预测不同语境之间的相关性。此外,我们发现这种动物的发育变异性可以在一个相对低维的表型流形上捕捉到,在这个流形上,遗传和环境对可塑性的贡献可以独立地去卷积。我们的观点为理解复杂系统中鲁棒性和灵活性之间的关系提供了一种新的方式,这表明维度的投影和集中可以自然地将这些力视为互补而非竞争。
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来源期刊
Molecular Systems Biology
Molecular Systems Biology 生物-生化与分子生物学
CiteScore
18.50
自引率
1.00%
发文量
62
审稿时长
6-12 weeks
期刊介绍: Systems biology is a field that aims to understand complex biological systems by studying their components and how they interact. It is an integrative discipline that seeks to explain the properties and behavior of these systems. Molecular Systems Biology is a scholarly journal that publishes top-notch research in the areas of systems biology, synthetic biology, and systems medicine. It is an open access journal, meaning that its content is freely available to readers, and it is peer-reviewed to ensure the quality of the published work.
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