Experimental tools to reduce the burden of bacterial synthetic biology

IF 3.4 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Current Opinion in Systems Biology Pub Date : 2021-12-01 DOI:10.1016/j.coisb.2021.100393
Alice Grob , Roberto Di Blasi , Francesca Ceroni
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引用次数: 10

Abstract

Cellular burden limits the applications of bacterial synthetic biology. Experimental approaches for burden minimisation have recently become available. Tools to identify construct design with low footprint on the host include capacity monitors that quantify cellular capacity, high-throughput approaches and cell-free systems for construct prototyping. Orthogonal ribosomes and feedback controllers are instead useful to seek control of resource allocation and lower burden. Other approaches include genome reduction to increase the available resource pool and synthetic addiction to couple cell fitness and product accumulation. However, controlling the cellular response to exogenous expression is still a challenge, and more tools are needed to widen the applications of synthetic biology. Further effort that combines novel evolutionary data with burden-aware tools can set the foundation to increase the stability and robustness of future genetic systems.

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实验工具减轻细菌合成生物学负担
细胞负荷限制了细菌合成生物学的应用。减少负担的实验方法最近已经可用。在主机上识别低占用空间的结构设计的工具包括量化单元容量的容量监视器、高通量方法和用于结构原型的无单元系统。正交核糖体和反馈控制器可用于寻求资源分配控制和降低负担。其他方法包括基因组减少以增加可用资源库和合成成瘾以偶联细胞适应度和产物积累。然而,控制细胞对外源表达的反应仍然是一个挑战,需要更多的工具来扩大合成生物学的应用。将新的进化数据与负担感知工具相结合的进一步努力可以为增加未来遗传系统的稳定性和健壮性奠定基础。
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来源期刊
Current Opinion in Systems Biology
Current Opinion in Systems Biology Mathematics-Applied Mathematics
CiteScore
7.10
自引率
2.70%
发文量
20
期刊介绍: Current Opinion in Systems Biology is a new systematic review journal that aims to provide specialists with a unique and educational platform to keep up-to-date with the expanding volume of information published in the field of Systems Biology. It publishes polished, concise and timely systematic reviews and opinion articles. In addition to describing recent trends, the authors are encouraged to give their subjective opinion on the topics discussed. As this is such a broad discipline, we have determined themed sections each of which is reviewed once a year. The following areas will be covered by Current Opinion in Systems Biology: -Genomics and Epigenomics -Gene Regulation -Metabolic Networks -Cancer and Systemic Diseases -Mathematical Modelling -Big Data Acquisition and Analysis -Systems Pharmacology and Physiology -Synthetic Biology -Stem Cells, Development, and Differentiation -Systems Biology of Mold Organisms -Systems Immunology and Host-Pathogen Interaction -Systems Ecology and Evolution
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From regulation of cell fate decisions towards patient-specific treatments, insights from mechanistic models of signalling pathways Editorial overview: Systems biology of ecological interactions across scales A critical review of multiscale modeling for predictive understanding of cancer cell metabolism Network modeling approaches for metabolic diseases and diabetes Contents
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