Reproducibility of species recognition in modern planktonic foraminifera and its implications for analyses of community structure

IF 4.1 3区 地球科学 Q1 PALEONTOLOGY Journal of Micropalaeontology Pub Date : 2018-12-04 DOI:10.5194/JM-37-519-2018
Nadia Al-Sabouni, Isabel S. Fenton, R. Telford, M. Kučera
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引用次数: 15

Abstract

Abstract. Applications of planktonic foraminifera in Quaternary palaeoceanographic and palaeobiological studies require consistency in species identification. Yet the degree of taxonomic consistency among the practitioners and the effects of any potential deviations on community structure metrics have never been quantitatively assessed. Here we present the results of an experiment in taxonomic consistency involving 21 researchers representing a range of experience and taxonomic schools from around the world. Participants were asked to identify the same two sets of 300 specimens from a modern subtropical North Atlantic sample, one sieved at >125 µm and one at > 150 µm. The identification was carried out either on actual specimens (slide test) or their digital images (digital test). The specimens were fixed so the identifications could be directly compared. In all tests, only between one-quarter and one-eighth of the specimens achieved absolute agreement. Therefore, the identifications across the participants were used to determine a consensus ID for each specimen. Since no strict consensus (>50 % agreement) could be achieved for 20–30 % of the specimens, we used a “soft consensus” based on the most common identification. The average percentage agreement relative to the consensus of the slide test was 77 % in the >150 µm and 69 % in the >125 µm test. These values were 7 % lower for the digital analyses. We find that taxonomic consistency is enhanced when researchers have been trained within a taxonomic school and when they regularly perform community analyses. There is an almost negligible effect of taxonomic inconsistency on sea surface temperature estimates based on transfer function conversion of the census counts, indicating the temperature signal in foraminiferal assemblages is correctly represented even if only two-thirds of the assemblage is consistently identified. The same does not apply to measures of diversity and community structure within the assemblage, and here we advise caution in using compound datasets for such studies. The decrease in the level of consistency when specimens are identified from digital images is significant and species-specific, with implications for the development of training sets for automated identification systems.
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现代浮游有孔虫物种识别的可重复性及其对群落结构分析的意义
摘要浮游有孔虫在第四纪古海洋学和古生物学研究中的应用需要物种鉴定的一致性。然而,从业者之间的分类一致性程度以及任何潜在偏差对群落结构指标的影响从未被定量评估过。在这里,我们提出了一项关于分类一致性的实验结果,涉及21名研究人员,他们代表了来自世界各地的一系列经验和分类学派。参与者被要求从现代亚热带北大西洋样本中识别同样的两组300个样本,一组在>125µm筛选,另一组在> 150µm筛选。对实际标本(滑动试验)或其数字图像(数字试验)进行识别。标本是固定的,这样可以直接比较鉴定。在所有的测试中,只有四分之一到八分之一的样本达到了绝对一致。因此,参与者的身份被用来确定每个标本的共识ID。由于对20 - 30%的标本没有严格的共识(50%的共识),我们使用了基于最常见鉴定的“软共识”。滑动试验的平均一致性百分比在>150µm试验中为77%,在>125µm试验中为69%。这些数值在数字分析中降低了7%。我们发现,当研究人员在分类学学校接受过培训,并定期进行社区分析时,分类学的一致性得到了增强。分类不一致性对基于普查计数的传递函数转换的海面温度估计的影响几乎可以忽略不计,这表明有孔虫组合中的温度信号被正确地表示,即使只有三分之二的组合被一致地识别出来。这同样不适用于组合内多样性和群落结构的测量,在这里,我们建议在使用复合数据集进行此类研究时要谨慎。当从数字图像中识别标本时,一致性水平的降低是显著的,并且是物种特异性的,这对自动识别系统的训练集的开发具有影响。
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来源期刊
Journal of Micropalaeontology
Journal of Micropalaeontology 生物-古生物学
CiteScore
4.30
自引率
5.00%
发文量
7
审稿时长
>12 weeks
期刊介绍: The Journal of Micropalaeontology (JM) is an established international journal covering all aspects of microfossils and their application to both applied studies and basic research. In particular we welcome submissions relating to microfossils and their application to palaeoceanography, palaeoclimatology, palaeobiology, evolution, taxonomy, environmental change and molecular phylogeny.
期刊最新文献
Late Miocene to Early Pliocene benthic foraminifera from the Tasman Sea (Integrated Ocean Drilling Program Site U1506) Palsys.org: an open-access taxonomic and stratigraphic database of organic-walled dinoflagellate cysts Miocene Climatic Optimum fungal record and plant-based CREST climatic reconstruction from southern McMurdo Sound, Antarctica Triassic and Jurassic possible planktonic foraminifera and the assemblages recovered from the Ogrodzieniec Glauconitic Marls Formation (uppermost Callovian and lowermost Oxfordian, Jurassic) of the Polish Basin Dinoflagellate cyst and pollen assemblages as tracers for marine productivity and river input in the northern Gulf of Mexico
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