{"title":"An Explainable Multichannel Model for COVID-19 Time Series Prediction","authors":"Hongjiang He, Jiang Xie, Xinwei Lu, Dingkai Huang, Wenjun Zhang","doi":"10.2174/1574893618666230727160507","DOIUrl":null,"url":null,"abstract":"\n\nThe COVID-19 pandemic has affected every country and changed people's lives. Accurate prediction of COVID-19 trends can help prevent the further spread of the outbreak. However, the changing environment affects the COVID-19 prediction performance, and previous models are limited in practical applications.\n\n\n\nAn explainable multichannel deep learning model with spatial, temporal and environmental channels for time series prediction, STE-COVIDNet, was proposed. The time series data of COVID-19 infection, weather, in-state population mobility, and vaccination were collected from May, 2020, to October, 2021, in the USA. In the environmental channel of STE-COVIDNet, an attention mechanism was applied to extract significant environmental factors related to the spread of COVID-19. In addition, the attention weights of these factors were analyzed with the actual situation.\n\n\n\nSTE-COVIDNet was found to be superior to other advanced prediction models of COVID-19 infection cases. The analysis results of attention weight were reported to be consistent with existing studies and reports. It was found that the same environmental factors that influence the spread of COVID-19 can vary across time and region, which explains why findings of previous studies on the relationship between the environment and COVID-19 vary by region and time.\n\n\n\nSTE-COVIDNet is an explainable model that can adapt to environmental changes and thus improve predictive performance.\n","PeriodicalId":10801,"journal":{"name":"Current Bioinformatics","volume":" ","pages":""},"PeriodicalIF":2.4000,"publicationDate":"2023-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.2174/1574893618666230727160507","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
The COVID-19 pandemic has affected every country and changed people's lives. Accurate prediction of COVID-19 trends can help prevent the further spread of the outbreak. However, the changing environment affects the COVID-19 prediction performance, and previous models are limited in practical applications.
An explainable multichannel deep learning model with spatial, temporal and environmental channels for time series prediction, STE-COVIDNet, was proposed. The time series data of COVID-19 infection, weather, in-state population mobility, and vaccination were collected from May, 2020, to October, 2021, in the USA. In the environmental channel of STE-COVIDNet, an attention mechanism was applied to extract significant environmental factors related to the spread of COVID-19. In addition, the attention weights of these factors were analyzed with the actual situation.
STE-COVIDNet was found to be superior to other advanced prediction models of COVID-19 infection cases. The analysis results of attention weight were reported to be consistent with existing studies and reports. It was found that the same environmental factors that influence the spread of COVID-19 can vary across time and region, which explains why findings of previous studies on the relationship between the environment and COVID-19 vary by region and time.
STE-COVIDNet is an explainable model that can adapt to environmental changes and thus improve predictive performance.
期刊介绍:
Current Bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Each issue contains a series of timely, in-depth/mini-reviews, research papers and guest edited thematic issues written by leaders in the field, covering a wide range of the integration of biology with computer and information science.
The journal focuses on advances in computational molecular/structural biology, encompassing areas such as computing in biomedicine and genomics, computational proteomics and systems biology, and metabolic pathway engineering. Developments in these fields have direct implications on key issues related to health care, medicine, genetic disorders, development of agricultural products, renewable energy, environmental protection, etc.