Mathematical models describing oxygen binding by hemoglobin.

IF 4.9 Q1 BIOPHYSICS Biophysical reviews Pub Date : 2023-08-16 eCollection Date: 2023-10-01 DOI:10.1007/s12551-023-01110-4
Igor A Lavrinenko, Gennady A Vashanov, José L Hernández Cáceres, Yury D Nechipurenko
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Abstract

Despite the fact that the investigation of the structural and functional properties of hemoglobin dates back more than 150 years, the topic has not lost its relevance today. The most important component of these studies is the development of mathematical models that formalize and generalize the mechanisms determining the cooperative binding of ligands based on data on the structural and functional state of the protein. In this work, we review the mathematical relationships describing oxygen binding by hemoglobin, ranging from the classical Hüfner, Hill, and Adair equations to the Szabo-Karplus and tertiary two-state mathematical models based on the Monod-Wyman-Changeux and Koshland-Némethy-Filmer concepts. The generality of the considered equations as mathematical functions, bearing in their basis a power dependence, is demonstrated. The problems and possible solutions related to approximation of experimental data by the oxygenation equations with correlated fitting parameters are noted. Attention is paid to empirical equations, extended versions of the Hill equation, where the coefficient of cooperation is modulated by Gauss and Lorentz distributions as functions of partial oxygen pressure.

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描述血红蛋白结合氧的数学模型
尽管对血红蛋白结构和功能特性的研究可以追溯到150多年前,但这个话题在今天并没有失去它的相关性。这些研究中最重要的组成部分是数学模型的发展,这些模型基于蛋白质结构和功能状态的数据,形式化和概括了决定配体合作结合的机制。在这项工作中,我们回顾了描述血红蛋白氧结合的数学关系,从经典的h fner, Hill和Adair方程到Szabo-Karplus和基于Monod-Wyman-Changeux和koshland - nsammethy - filmer概念的三级两态数学模型。所考虑的方程作为数学函数的普遍性,在其基础上具有幂依赖关系,被证明。指出了用具有相关拟合参数的氧合方程逼近实验数据时存在的问题和可能的解决方法。注意到经验方程,希尔方程的扩展版本,其中合作系数由高斯和洛伦兹分布作为分氧压的函数调制。
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来源期刊
Biophysical reviews
Biophysical reviews Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
8.90
自引率
0.00%
发文量
93
期刊介绍: Biophysical Reviews aims to publish critical and timely reviews from key figures in the field of biophysics. The bulk of the reviews that are currently published are from invited authors, but the journal is also open for non-solicited reviews. Interested authors are encouraged to discuss the possibility of contributing a review with the Editor-in-Chief prior to submission. Through publishing reviews on biophysics, the editors of the journal hope to illustrate the great power and potential of physical techniques in the biological sciences, they aim to stimulate the discussion and promote further research and would like to educate and enthuse basic researcher scientists and students of biophysics. Biophysical Reviews covers the entire field of biophysics, generally defined as the science of describing and defining biological phenomenon using the concepts and the techniques of physics. This includes but is not limited by such areas as: - Bioinformatics - Biophysical methods and instrumentation - Medical biophysics - Biosystems - Cell biophysics and organization - Macromolecules: dynamics, structures and interactions - Single molecule biophysics - Membrane biophysics, channels and transportation
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