The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing

IF 1.7 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Journal of Inclusion Phenomena and Macrocyclic Chemistry Pub Date : 2021-06-05 DOI:10.1007/s10847-021-01087-1
Numan Yuksel, Ahmet Köse, M. Ferdi Fellah
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Abstract

While the world is in search of a vaccine that can cure COVID-19 disease, favipiravir is the most commonly used antiviral drug in the treatment of patients during the pandemic process. In this study, we investigated the host–guest interaction between the popular supramolecule calix[4]arene derivatives and the favipiravir drug by using the DFT (Density Functional Theory) method. The B3LYP hybrid method and 6-31G (d,p) basis set were utilized to determine the optimized structures of the host and guest molecules and their complexes. The negative adsorption energy (∆E) and adsorption enthalpy (∆H) calculated for the complexes formed between calix[4]arene compounds and favipiravir drug molecule mentioned that adsorption of favipiravir molecule was an exothermic process on calix[4]arene structures. On the other hand, among the calixarene derivatives in the study, Gibbs free energy change (∆G) value for the adsorption was only negative on calix[4]arene4 molecule. The infrared spectroscopy (IR) calculations were performed by examining the C=O, O–H and NH2 vibrational frequencies to see the adsorption behavior in the favipiravir-calix[4]arene complex. After adsorption of the favipiravir molecule, HOMO–LUMO gap values decreased significantly for the structures and therefore electrical conductivity increased proportionally. In addition, sensor response factors, Fermi energy levels and workfunction changes of calix[4]arene derivatives were calculated and examined. Charge transfer between the four calix[4]arene compounds and the favipiravir molecule has occurred after adsorption. This attributes that calix[4]arene derivatives can be used as a well-suited favipiravir sensor (electronic and workfunction) and adsorbent at room temperature. Based on the calculations made to see the solvent effect on the adsorption of favipiravir it was determined that it did not affect the interaction between the drug molecule and the calix[4]arene compound too much and the adsorption energy turned into a slightly less negative value.

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卡利克[4]炔衍生物与法非拉韦抗病毒药物(用于治疗 COVID-19)的超分子配合物:关于吸附和传感的几何优化、电子结构和红外光谱的 DFT 研究
当全世界都在寻找能够治愈 COVID-19 疾病的疫苗时,法匹拉韦是大流行过程中治疗患者最常用的抗病毒药物。在本研究中,我们采用 DFT(密度泛函理论)方法研究了流行的超分子卡利克[4]炔衍生物与法非拉韦药物之间的主客体相互作用。利用 B3LYP 混合方法和 6-31G (d,p) 基集确定了主分子、客分子及其复合物的优化结构。计算得出的卡利克[4]炔化合物与法非拉韦药物分子形成的复合物的负吸附能(ΔE)和吸附焓(ΔH)表明,法非拉韦分子在卡利克[4]炔结构上的吸附是一个放热过程。另一方面,在研究的钙[4]烯衍生物中,吸附的吉布斯自由能变化(ΔG)值仅在钙[4]烯4 分子上为负值。通过研究 C=O、O-H 和 NH2 的振动频率,进行了红外光谱(IR)计算,以了解法非拉韦酯-钙力[4]炔复合物的吸附行为。吸附了法非拉韦分子后,这些结构的 HOMO-LUMO 间隙值明显降低,因此导电率也相应提高。此外,还计算并研究了卡利克[4]炔衍生物的传感器响应因子、费米能级和功函数变化。四种卡利克[4]炔化合物和法非拉韦分子在吸附后发生了电荷转移。这说明钙[4]炔衍生物可在室温下用作非常适合的法非拉韦传感器(电子功能和工作功能)和吸附剂。根据对溶剂对法比拉韦吸附影响的计算,可以确定溶剂不会对药物分子和卡利克[4]炔化合物之间的相互作用产生太大影响,吸附能也变成了一个稍小的负值。
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来源期刊
Journal of Inclusion Phenomena and Macrocyclic Chemistry
Journal of Inclusion Phenomena and Macrocyclic Chemistry Agricultural and Biological Sciences-Food Science
CiteScore
4.10
自引率
8.70%
发文量
54
期刊介绍: The Journal of Inclusion Phenomena and Macrocyclic Chemistry is the premier interdisciplinary publication reporting on original research into all aspects of host-guest systems. Examples of specific areas of interest are: the preparation and characterization of new hosts and new host-guest systems, especially those involving macrocyclic ligands; crystallographic, spectroscopic, thermodynamic and theoretical studies; applications in chromatography and inclusion polymerization; enzyme modelling; molecular recognition and catalysis by inclusion compounds; intercalates in biological and non-biological systems, cyclodextrin complexes and their applications in the agriculture, flavoring, food and pharmaceutical industries; synthesis, characterization and applications of zeolites. The journal publishes primarily reports of original research and preliminary communications, provided the latter represent a significant advance in the understanding of inclusion science. Critical reviews dealing with recent advances in the field are a periodic feature of the journal.
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