J. Skorupski, M. Szenejko, Martyna Gruba-Tabaka, P. Śmietana, R. Panicz
{"title":"Inferring population structure and genetic diversity of the invasive alien Nootka lupin in Iceland","authors":"J. Skorupski, M. Szenejko, Martyna Gruba-Tabaka, P. Śmietana, R. Panicz","doi":"10.33265/POLAR.V40.4536","DOIUrl":null,"url":null,"abstract":"Polar and subpolar regions are known for their particular vulnerability and sensitivity to the detrimental effects of non-indigenous species, which is well exemplified by the Nootka lupin (Lupinus nootkatensis) spread in Iceland. Since understanding the population and ecological genetics of invasive alien species offers hope for counteracting harmful biological invasions, the objective of the present study was to investigate interspecific variation in L. nootkatensis in Iceland in relation to a native population in Alaska. Moreover, we aimed to assess whether internal transcribed spacer 2 (ITS2) has sufficient phylogenetic applicability for a large-scale screening of the genetic diversity of a non-indigenous population of this species. This study, which is the first attempt to investigate the genetic diversity of the Nootka lupin in Iceland, included plant samples from eight locations in Iceland and one in Alaska. The analyses included genotyping by sequencing of the 417-nucleotide fragment of the 5.8S ribosomal RNA, ITS2 and part of the large subunit ribosomal RNA (GenBank MT026578-MT026580, MT077004). The main findings showed the presence of five previously unexplained single-nucleotide polymorphisms (SNPs); however, their discriminatory power for Icelandic populations was relatively low, since polymorphism information content (PIC) values ranged from 0.0182 to 0.0526, with average heterozygosity 0.0296. Concomitantly, analysis of multilocus genotypes (MLG) revealed sufficient differences in MLGs variants and their frequency to form genotypic patterns unique for Alaskan and Icelandic populations, revealing an internal genetic structure of the studied group. The proposed SNP panel needs to be supplemented with other nuclear and organellar markers.","PeriodicalId":49684,"journal":{"name":"Polar Research","volume":null,"pages":null},"PeriodicalIF":1.9000,"publicationDate":"2021-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Polar Research","FirstCategoryId":"89","ListUrlMain":"https://doi.org/10.33265/POLAR.V40.4536","RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 1
Abstract
Polar and subpolar regions are known for their particular vulnerability and sensitivity to the detrimental effects of non-indigenous species, which is well exemplified by the Nootka lupin (Lupinus nootkatensis) spread in Iceland. Since understanding the population and ecological genetics of invasive alien species offers hope for counteracting harmful biological invasions, the objective of the present study was to investigate interspecific variation in L. nootkatensis in Iceland in relation to a native population in Alaska. Moreover, we aimed to assess whether internal transcribed spacer 2 (ITS2) has sufficient phylogenetic applicability for a large-scale screening of the genetic diversity of a non-indigenous population of this species. This study, which is the first attempt to investigate the genetic diversity of the Nootka lupin in Iceland, included plant samples from eight locations in Iceland and one in Alaska. The analyses included genotyping by sequencing of the 417-nucleotide fragment of the 5.8S ribosomal RNA, ITS2 and part of the large subunit ribosomal RNA (GenBank MT026578-MT026580, MT077004). The main findings showed the presence of five previously unexplained single-nucleotide polymorphisms (SNPs); however, their discriminatory power for Icelandic populations was relatively low, since polymorphism information content (PIC) values ranged from 0.0182 to 0.0526, with average heterozygosity 0.0296. Concomitantly, analysis of multilocus genotypes (MLG) revealed sufficient differences in MLGs variants and their frequency to form genotypic patterns unique for Alaskan and Icelandic populations, revealing an internal genetic structure of the studied group. The proposed SNP panel needs to be supplemented with other nuclear and organellar markers.
期刊介绍:
Since 1982, Polar Research has been the international, peer-reviewed journal of the Norwegian Polar Institute, Norway''s central institution for research, environmental monitoring and mapping of the polar regions. Aiming to promote the exchange of scientific knowledge about the Arctic and Antarctic across disciplinary boundaries, Polar Research serves an international community of researchers and managers. As an open-access journal, Polar Research makes its contents freely available to the general public.
Original primary research papers comprise the mainstay of Polar Research. Review articles, brief research notes, letters to the editor and book reviews are also included. Special issues are published from time to time.
The scope of Polar Research encompasses research in all scientific disciplines relevant to the polar regions. These include, but are not limited to, the subfields of biology, ecology, geology, oceanography, glaciology and atmospheric science. Submissions from the social sciences and those focusing on polar management and policy issues are welcome. Contributions about Antarctica are particularly encouraged.