The complete chloroplast genome of Limonium tetragonum (Plumbaginaceae) isolated in Korea

IF 0.8 Q4 PLANT SCIENCES KOREAN JOURNAL OF PLANT TAXONOMY Pub Date : 2021-09-30 DOI:10.11110/kjpt.2021.51.3.337
Yongsung Kim, Hong Xi, Jongsun Park
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引用次数: 3

Abstract

The chloroplast genome of Limonium tetragonum (Thunb.) Bullock, a halophytic species, was sequenced to understand genetic differences based on its geographical distribution. The cp genome of L. tetragonum was 154,689 bp long (GC ratio is 37.0%) and has four subregions: 84,572 bp of large single-copy (35.3%) and 12,813 bp of small singlecopy (31.5%) regions were separated by 28,562 bp of inverted repeat (40.9%) regions. It contained 128 genes (83 proteincoding genes, eight rRNAs, and 37 tRNAs). Thirty-five single-nucleotide polymorphisms and 33 INDEL regions (88 bp in length) were identified. Maximum-likelihood and Bayesian inference phylogenetic trees showed that L. tetragonum formed a sister group with L. aureum, which is incongruent with certain previous studies, including a phylogenetic analysis.
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韩国分离的白桦属植物(Limonium tetragonum)叶绿体全基因组
对盐生植物四角藻(Limonium tetragonum(Thunb.)Bullock)的叶绿体基因组进行了测序,以了解其地理分布的遗传差异。L.tetragonum的cp基因组长154689bp(GC比率为37.0%),有四个亚区:84572bp的大单拷贝(35.3%)和12813bp的小单拷贝(31.5%)区域被28562bp的反向重复(40.9%)区域分开。它包含128个基因(83个蛋白质编码基因、8个rRNA和37个tRNA)。鉴定出35个单核苷酸多态性和33个INDEL区(长度为88bp)。最大似然和贝叶斯推断系统发育树表明,四角乳杆菌与金色乳杆菌形成姐妹群,这与之前的某些研究(包括系统发育分析)不一致。
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来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
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