Comparison of Complexity and Predictability of a Cellular Automaton Model in Excitable Media Cardiac Wave Propagation Compared with a FitzHugh-Nagumo Model

Yujing Zou, G. Bub
{"title":"Comparison of Complexity and Predictability of a Cellular Automaton Model in Excitable Media Cardiac Wave Propagation Compared with a FitzHugh-Nagumo Model","authors":"Yujing Zou, G. Bub","doi":"10.26443/msurj.v15i1.12","DOIUrl":null,"url":null,"abstract":"Background: Excitable media are spatially distributed systems that propagate signals without damping. Examples include fire propagating through a forest, the Belousov-Zhabotinsky reaction, and cardiac tissue. (1) Excitable media generate waves which synchronize cardiac muscle contraction with each heartbeat. Spatiotemporal patterns formed by excitation waves distinguish healthy heart tissues from diseased ones. (3) Discrete Greenberg-Hastings Cellular- Automaton (CA) (1) and the continuous FitzHugh- Nagumo (FHN) model (7) are two methods used to simulate cardiac wave propagation. However, previous observations have shown that these models are not accurately predictive of experimental results as a function of time. We hypothesize that cardiac simulations deviate from the experimental data at a rate that depends on the complexity of the experimental data’s initial conditions (I.C.).Methods: To test this hypothesis, we investigated two types of propagating waves with different complexities: a planar (i.e. simple) and a spiral wave (i.e. complex). With the same I.C., we first compared simulation results of a Greenberg-Hastings Cellular Automaton (GH-CA) model to that a FitzHugh-Nagumo (FHN) continuous model which we used as a surrogate for experimental data. We then used median-filtered real-time cardiac tissue experimental data to initialize the GH-CA model and observe the divergence of wave propagation in the simulation and the experiment.Results: The alignment between the CA model of a planar wave and the FHN model remains constant, while the degree of overlap between the CA and FHN models decreases for a spiral wave as a function of time. CA simulation initialized by a planar wave real-time cardiac tissue data propagates like the experimental data, however, this is not the case for the spiral wave experimental data.Conclusion: We were able to confirm our hypothesis that the divergence between the two models is due to initial condition (I.C.) complexity.Discussion: We discuss a promising strategy to represent a GH-CA model as a Convolutional Neural Network (CNN) to enhance predictability of the model when an initial condition is given by the experimental data with a higher level of complexity.","PeriodicalId":91927,"journal":{"name":"McGill Science undergraduate research journal : MSURJ","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"McGill Science undergraduate research journal : MSURJ","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.26443/msurj.v15i1.12","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Background: Excitable media are spatially distributed systems that propagate signals without damping. Examples include fire propagating through a forest, the Belousov-Zhabotinsky reaction, and cardiac tissue. (1) Excitable media generate waves which synchronize cardiac muscle contraction with each heartbeat. Spatiotemporal patterns formed by excitation waves distinguish healthy heart tissues from diseased ones. (3) Discrete Greenberg-Hastings Cellular- Automaton (CA) (1) and the continuous FitzHugh- Nagumo (FHN) model (7) are two methods used to simulate cardiac wave propagation. However, previous observations have shown that these models are not accurately predictive of experimental results as a function of time. We hypothesize that cardiac simulations deviate from the experimental data at a rate that depends on the complexity of the experimental data’s initial conditions (I.C.).Methods: To test this hypothesis, we investigated two types of propagating waves with different complexities: a planar (i.e. simple) and a spiral wave (i.e. complex). With the same I.C., we first compared simulation results of a Greenberg-Hastings Cellular Automaton (GH-CA) model to that a FitzHugh-Nagumo (FHN) continuous model which we used as a surrogate for experimental data. We then used median-filtered real-time cardiac tissue experimental data to initialize the GH-CA model and observe the divergence of wave propagation in the simulation and the experiment.Results: The alignment between the CA model of a planar wave and the FHN model remains constant, while the degree of overlap between the CA and FHN models decreases for a spiral wave as a function of time. CA simulation initialized by a planar wave real-time cardiac tissue data propagates like the experimental data, however, this is not the case for the spiral wave experimental data.Conclusion: We were able to confirm our hypothesis that the divergence between the two models is due to initial condition (I.C.) complexity.Discussion: We discuss a promising strategy to represent a GH-CA model as a Convolutional Neural Network (CNN) to enhance predictability of the model when an initial condition is given by the experimental data with a higher level of complexity.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
细胞自动机模型与FitzHugh Nagumo模型在可兴奋介质心波传播中的复杂性和可预测性比较
背景:可激发介质是空间分布的系统,在没有阻尼的情况下传播信号。例子包括在森林中蔓延的火灾、Belousov-Zhabotinsky反应和心脏组织。(1) 兴奋性介质产生的波使心肌收缩与每次心跳同步。由激励波形成的时空模式将健康的心脏组织与患病的心脏组织区分开来。(3) 离散Greenberg-Hastings细胞自动机(CA)(1)和连续FitzHugh-Nagumo(FHN)模型(7)是用于模拟心搏波传播的两种方法。然而,先前的观察表明,这些模型不能准确预测作为时间函数的实验结果。我们假设心脏模拟与实验数据的偏离率取决于实验数据初始条件(I.C.)的复杂性。方法:为了验证这一假设,我们研究了两种具有不同复杂性的传播波:平面波(即简单波)和螺旋波(即复杂波)。在相同的I.C.下,我们首先比较了Greenberg Hastings细胞自动机(GH-CA)模型与FitzHugh Nagumo(FHN)连续模型的模拟结果,我们将其用作实验数据的替代品。然后,我们使用中值滤波的实时心脏组织实验数据来初始化GH-CA模型,并在模拟和实验中观察波传播的发散性。结果:平面波的CA模型和FHN模型之间的对齐保持不变,而螺旋波的CA和FHN模式之间的重叠程度随着时间的函数而减小。由平面波初始化的CA模拟实时心脏组织数据像实验数据一样传播,然而,螺旋波实验数据并非如此。结论:我们能够证实我们的假设,即两个模型之间的差异是由于初始条件(I.C.)的复杂性。讨论:我们讨论了一种很有前途的策略,将GH-CA模型表示为卷积神经网络(CNN),以在具有更高复杂度的实验数据给出初始条件时提高模型的可预测性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Role of Iron in Epidermal Healing and Infection At Once Friends and Foes Enduring Controversial Story in the Human Brain Rho GTPase regulatory proteins contribute to podocyte morphology and function Uncovering the Regulators of CRISPR-Cas Immunity
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1