Barking up the wrong tree: the dangers of taxonomic misidentification in molecular phylogenetic studies

IF 1.1 4区 生物学 Q3 PLANT SCIENCES Plant Ecology and Evolution Pub Date : 2023-04-19 DOI:10.5091/plecevo.101135
R. F. de Almeida, Marco O. O. Pellegrini, I. L. de Morais, R. Simão-Bianchini, Pantamith Rattanakrajang, M. Cheek, A. R. Simões
{"title":"Barking up the wrong tree: the dangers of taxonomic misidentification in molecular phylogenetic studies","authors":"R. F. de Almeida, Marco O. O. Pellegrini, I. L. de Morais, R. Simão-Bianchini, Pantamith Rattanakrajang, M. Cheek, A. R. Simões","doi":"10.5091/plecevo.101135","DOIUrl":null,"url":null,"abstract":"Background and aims – Keraunea is a Brazilian endemic genus that has sat uncomfortably in Convolvulaceae where it was placed due to an enlarged and adnate fruit bract typical of Neuropeltis. A recent molecular phylogeny suggested that two of its five morphologically almost identical species actually belong to two different families, Malpighiaceae (superrosids) and Ehretiaceae (superasterids). Later studies have demonstrated that Keraunea effectively belongs to Ehretiaceae, but the proposal of one species belonging to Malpighiaceae has remained problematic. In this study, we re-assess this hypothesis, discuss the issues that have led to this assumption, and offer insights on the importance of carefully using herbarium collections and incorporating morphological evidence in systematic studies.\n Material and methods – Sequences of matK, rbcL, and ITS for all 77 currently accepted genera of Malpighiaceae, K. brasiliensis and Elatinaceae (outgroup) were compiled from GenBank and analysed with Maximum Likelihood and Bayesian Inference criteria for nuclear, plastid and combined datasets. Additional database and herbarium studies were performed to locate and analyse all duplicates of the holotype of K. brasiliensis to check for misidentified or contaminated material.\n Key results – Our examination of expanded DNA datasets and herbarium sheets of all K. brasiliensis isotypes revealed that a mistake in tissue sampling was, in fact, what led to this species being proposed to belong in Malpighiaceae. Kew’s isotype had a leaf of Malpighiaceae (likely Mascagnia cordifolia) stored in the fragment capsule, which was sampled and sequenced instead of the actual leaves of K. brasiliensis. Recently published studies have settled the placement of Keraunea in Ehretiaceae (Boraginales) and proposed three additional species.\n Conclusions – DNA sequences can be helpful in classifying taxa when morphology is conflicting or of a doubtful interpretation, with molecular phylogenetic placement being established as a popular tool accelerating the discovery of systematic relationships. Nonetheless, molecular techniques are also susceptible to methodological mistakes, which necessitates building a solid foundation of plant morphology and taxonomy to avoid artefacts in phylogenetic studies.","PeriodicalId":54603,"journal":{"name":"Plant Ecology and Evolution","volume":" ","pages":""},"PeriodicalIF":1.1000,"publicationDate":"2023-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Ecology and Evolution","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.5091/plecevo.101135","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 3

Abstract

Background and aims – Keraunea is a Brazilian endemic genus that has sat uncomfortably in Convolvulaceae where it was placed due to an enlarged and adnate fruit bract typical of Neuropeltis. A recent molecular phylogeny suggested that two of its five morphologically almost identical species actually belong to two different families, Malpighiaceae (superrosids) and Ehretiaceae (superasterids). Later studies have demonstrated that Keraunea effectively belongs to Ehretiaceae, but the proposal of one species belonging to Malpighiaceae has remained problematic. In this study, we re-assess this hypothesis, discuss the issues that have led to this assumption, and offer insights on the importance of carefully using herbarium collections and incorporating morphological evidence in systematic studies. Material and methods – Sequences of matK, rbcL, and ITS for all 77 currently accepted genera of Malpighiaceae, K. brasiliensis and Elatinaceae (outgroup) were compiled from GenBank and analysed with Maximum Likelihood and Bayesian Inference criteria for nuclear, plastid and combined datasets. Additional database and herbarium studies were performed to locate and analyse all duplicates of the holotype of K. brasiliensis to check for misidentified or contaminated material. Key results – Our examination of expanded DNA datasets and herbarium sheets of all K. brasiliensis isotypes revealed that a mistake in tissue sampling was, in fact, what led to this species being proposed to belong in Malpighiaceae. Kew’s isotype had a leaf of Malpighiaceae (likely Mascagnia cordifolia) stored in the fragment capsule, which was sampled and sequenced instead of the actual leaves of K. brasiliensis. Recently published studies have settled the placement of Keraunea in Ehretiaceae (Boraginales) and proposed three additional species. Conclusions – DNA sequences can be helpful in classifying taxa when morphology is conflicting or of a doubtful interpretation, with molecular phylogenetic placement being established as a popular tool accelerating the discovery of systematic relationships. Nonetheless, molecular techniques are also susceptible to methodological mistakes, which necessitates building a solid foundation of plant morphology and taxonomy to avoid artefacts in phylogenetic studies.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
找错了对象:分子系统发育研究中分类错误识别的危险
背景和目的——角果属是巴西的一个特有属,由于其典型的神经球果的增大和附生果苞片,它在旋花科中的位置令人不安。最近的一项分子系统发育研究表明,它的五个形态几乎相同的物种中有两个实际上属于两个不同的科,Malpighiaceae(superrosids)和Ehretiaceae(supersterids)。后来的研究表明,角叉菜实际上属于鹅掌菜科,但关于属于马齿苋科的一个物种的提议仍然存在问题。在这项研究中,我们重新评估了这一假设,讨论了导致这一假设的问题,并深入了解了仔细使用植物标本馆藏品和将形态学证据纳入系统研究的重要性。材料和方法——从GenBank中汇编了目前被接受的Malpighiaceae、K.brasiliensis和Elatinaceae(外群)的所有77个属的matK、rbcL和ITS序列,并使用核、质体和组合数据集的最大似然和贝叶斯推断标准进行了分析。进行了额外的数据库和植物标本馆研究,以定位和分析巴西K.brasiliensis正模的所有副本,以检查是否存在误认或受污染的材料。关键结果——我们对所有巴西K.brasiliensis同种型的扩展DNA数据集和植物标本馆表的检查表明,事实上,组织采样的错误导致了该物种被认为属于锦葵科。Kew的同种型有一片Malpighiaceae的叶子(可能是Mascagnia cordifolia)储存在碎片胶囊中,并对其进行了采样和测序,而不是brasiliensis的实际叶子。最近发表的研究已经确定了角藻在紫草科(Boraginales)中的位置,并提出了另外三个物种。结论-当形态学存在冲突或解释有疑问时,DNA序列有助于对分类群进行分类,分子系统发育定位被视为加速发现系统关系的流行工具。尽管如此,分子技术也容易出现方法上的错误,这就需要为植物形态和分类学奠定坚实的基础,以避免系统发育研究中的人为错误。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Plant Ecology and Evolution
Plant Ecology and Evolution PLANT SCIENCES-
CiteScore
2.20
自引率
9.10%
发文量
27
审稿时长
>12 weeks
期刊介绍: Plant Ecology and Evolution is an international peer-reviewed journal devoted to ecology, phylogenetics and systematics of all ‘plant’ groups in the traditional sense (including algae, cyanobacteria, fungi, myxomycetes), also covering related fields. The journal is published by Meise Botanic Garden and the Royal Botanical Society of Belgium.
期刊最新文献
Diversity and distribution of ferns and clubmosses in the eastern canyons of Isalo National Park, Madagascar Evolution of pollen grain morphology in Amorimia and allies evidences the importance of palynological apomorphies and homoplasies in Malpighiaceae systematics A new purple-flowered Butia (Arecaceae) from the highlands of the Chapada dos Veadeiros (Brazil) A new Ypsilopus (Orchidaceae, Angraecinae) from Zimbabwe and notes on the parallel evolution of extreme column exsertion in African angraecoids Novelties in the genus Acalypha (Euphorbiaceae, Acalyphoideae): two new species from northern Madagascar
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1