CURSAT ver. 2.1: A Simple, Resampling-Based, Program to Generate Pseudoreplicates of Data and Calculate Rarefaction Curves

Q1 Social Sciences Journal of Open Research Software Pub Date : 2020-08-21 DOI:10.5334/jors.260
G. Gentile
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Abstract

CURSAT ver. 2.1 is an open-source code in QB64 basic, compilable into an executable file, that produces n pseudoreplicates of an empirical data set. Both resamplings with and without replacement are allowed by the software. The number (n) of pseudoreplicates is set by the user. Pseudoreplicates can be exported in a file that can be opened by a spreadsheet. Thus, pseudoreplicates are permanently stored and available for the calculation of statistics of interest and associated variance. The software also uses the n pseudoreplicate data to reconstruct n accumulation matrices, appended in an output file. Accumulation has applicability in cases in which repeated sample-based data must be evaluated for exhaustiveness. Many situations involve repeated sampling from the same set of observations. For example, if data consist of species occurrence, the software can be used by a wide spectrum of specialists such as ecologists, zoologists, botanists, biogeographers, conservationists for biodiversity estimation. The software allows performing accumulation irrespectively whether the input data set contains abundance (quantitative) or incidence (binary) data. Accumulation matrices can be imported in statistical packages to estimate distributions of successive pooling of samples and depict accumulation and rarefaction curves with associated variance. CURSAT ver. 2.1 is released in two editions. Edition #1 is recommended for analysis, whereas Edition #2 generates a log file in which the flow of internal steps of resampling and accumulation routines is reported. Edition #2 is primarily designed for educational purposes and quality check. Funding statement: The software was developed with no specific funds.
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CURSAT 2.1版:一个简单的基于重采样的程序,用于生成数据的伪复制和计算稀疏曲线
CURSAT 2.1版是QB64 basic中的一个开源代码,可编译到一个可执行文件中,生成n个经验数据集的伪复制。软件允许使用和不使用替换进行重新采样。伪复制的数量(n)由用户设置。伪复制可以导出到可以通过电子表格打开的文件中。因此,伪复制被永久存储并可用于计算感兴趣的统计数据和相关的方差。该软件还使用n个伪复制数据来重建附加在输出文件中的n个累积矩阵。累积适用于必须评估重复样本数据的详尽性的情况。许多情况涉及从同一组观测值中重复采样。例如,如果数据由物种发生组成,则生态学家、动物学家、植物学家、生物地理学家、自然资源保护主义者等广泛的专家可以使用该软件进行生物多样性估计。该软件允许执行累积,而不考虑输入数据集是否包含丰度(定量)或发生率(二进制)数据。累积矩阵可以在统计包中导入,以估计连续样本池的分布,并描述具有相关方差的累积和稀疏曲线。CURSAT 2.1版有两个版本。建议使用第1版进行分析,而第2版生成一个日志文件,其中报告了重新采样和累积例程的内部步骤流程。版本#2主要用于教育目的和质量检查。资金说明:该软件是在没有具体资金的情况下开发的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Open Research Software
Journal of Open Research Software Social Sciences-Library and Information Sciences
CiteScore
6.50
自引率
0.00%
发文量
7
审稿时长
21 weeks
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