Comprehensive Analysis of ADAMTS Gene Family in Renal Clear Cell Carcinoma and ADAMTS10 Research Combining Magnetic Resonance Imaging.

IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Biotechnology Pub Date : 2024-11-01 Epub Date: 2023-10-20 DOI:10.1007/s12033-023-00915-8
Haifeng Hu, Ying Wang, Ying Liu, Chunyu Zhang, Guoan Li, Tianyu Zhang, Bo Dong
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Abstract

Clear cell renal carcinoma (ccRCC) is one of the cancers that posed a severe threat to human life on a global scale. The ADAMTS family has been proven to be involved in a number of tumor types, although it is yet unknown how they relate to ccRCC. The mRNA expression matrix and other clinically relevant information of 607 ccRCC were sourced from TCGA database. The role of ADAMTS family genes in ccRCC was determined by differential gene expression analysis and gene set enrichment analysis (GSEA). Employing stage grading, gene mutation, and survival analysis, the genes most linked to the prognosis of ccRCC were identified. The influence of genes on the pathway was determined by Kyoto Encyclopedia of Genes and Genes (KEGG) analysis. Following that, the gene's impact on ccRCC was verified by qRT-PCR, WB, MTT, Transwell detection, and a wound healing assay. Bioinformatics analysis showed that ADAMTS10 was overexpressed in cancerous tissues of people with ccRCC and its expression increased with tumor grade. Mutation analysis showed that the main cause of mutation in the ADAMTS family gene was amplification. The prognosis and survival of the ADAMTS10 elevated expression group were lower than those of the poorly expressed group, as demonstrated by a survival analysis. On the basis of the findings of MRI, we examined 60 clinical patients and collected their cancer along with the surrounding tissues. The results of qPCR detection showed that the expression of ADAMTS10 was considerably higher in cancerous regions of 60 clinical users than it was in the tissues nearby. Inhibiting ADAMTS10 development prevents cancer cells from proliferating, invading, and migrating. The KEGG analysis links ADAMTS10 to the NF-κB signal pathway. WB experiment confirmed that inhibiting ADAMTS10 expression can inhibit the activation of the NF-κB signal pathway. ADAMTS10 may be a promising prognostic marker for ccRCC that can be employed independently.

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肾透明细胞癌ADAMTS基因家族的综合分析及结合磁共振成像的ADAMTS10研究。
透明细胞肾癌(ccRCC)是在全球范围内对人类生命构成严重威胁的癌症之一。ADAMTS家族已被证明与多种肿瘤类型有关,尽管尚不清楚它们与ccRCC的关系。607个ccRCC的mRNA表达矩阵和其他临床相关信息来源于TCGA数据库。通过差异基因表达分析和基因集富集分析(GSEA)确定ADAMTS家族基因在ccRCC中的作用。通过分期、基因突变和生存分析,确定了与ccRCC预后最相关的基因。基因对该途径的影响通过京都基因和基因百科全书(KEGG)分析确定。随后,通过qRT-PCR、WB、MTT、Transwell检测和伤口愈合测定验证了该基因对ccRCC的影响。生物信息学分析表明,ADAMTS10在ccRCC患者的癌组织中过表达,其表达随肿瘤分级而增加。突变分析表明ADAMTS家族基因突变的主要原因是扩增。生存分析表明,ADAMTS10高表达组的预后和生存率低于低表达组。在MRI检查的基础上,我们检查了60名临床患者,并收集了他们的癌症及其周围组织。qPCR检测结果显示,ADAMTS10在60名临床使用者的癌区中的表达显著高于在附近组织中的表达。抑制ADAMTS10的发展可防止癌症细胞增殖、入侵和迁移。KEGG分析将ADAMTS10与NF-κB信号通路联系起来。WB实验证实,抑制ADAMTS10的表达可以抑制NF-κB信号通路的激活。ADAMTS10可能是一种有前途的ccRCC预后标志物,可以独立使用。
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来源期刊
Molecular Biotechnology
Molecular Biotechnology 医学-生化与分子生物学
CiteScore
4.10
自引率
3.80%
发文量
165
审稿时长
6 months
期刊介绍: Molecular Biotechnology publishes original research papers on the application of molecular biology to both basic and applied research in the field of biotechnology. Particular areas of interest include the following: stability and expression of cloned gene products, cell transformation, gene cloning systems and the production of recombinant proteins, protein purification and analysis, transgenic species, developmental biology, mutation analysis, the applications of DNA fingerprinting, RNA interference, and PCR technology, microarray technology, proteomics, mass spectrometry, bioinformatics, plant molecular biology, microbial genetics, gene probes and the diagnosis of disease, pharmaceutical and health care products, therapeutic agents, vaccines, gene targeting, gene therapy, stem cell technology and tissue engineering, antisense technology, protein engineering and enzyme technology, monoclonal antibodies, glycobiology and glycomics, and agricultural biotechnology.
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