Characterization and genomic analysis of a novel bacteriophage BUCT_49532 lysing Klebsiella pneumoniae.

IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Virus Genes Pub Date : 2023-12-01 Epub Date: 2023-10-19 DOI:10.1007/s11262-023-02033-8
Guangye Zhang, Yucong Liu, Jinhong Wang, Nan Li, Pengjun Han, Yiming Chen, Weijian Xu, Changxia Liu
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Abstract

Bacteriophages are a type of virus widely distributed in nature that demonstrates a remarkable aptitude for selectively recognizing and infecting bacteria. In particular, Klebsiella pneumoniae is acknowledged as a clinical pathogen responsible for nosocomial infections and frequently develops multidrug resistance. Considering the increasing prevalence of antibiotic-resistant bacteria, bacteriophages have emerged as a compelling alternative therapeutic approach. In this study, a novel phage named BUCT_49532 was isolated from sewage using K. pneumoniae K1119 as the host. Electron microscopy revealed that BUCT_49532 belongs to the Caudoviricetes class. Further analysis through whole genome sequencing demonstrated that BUCT_49532 is a Jedunavirus comprised of linear double-stranded DNA with a length of 49,532 bp. Comparative genomics analysis based on average nucleotide identity (ANI) values revealed that BUCT_49532 should be identified as a novel species. Characterized by a good safety profile, high environmental stability, and strong lytic performance, phage BUCT_49532 presents an interesting case for consideration. Although its host range is relatively narrow, its application potential can be expanded by utilizing phage cocktails, making it a promising candidate for biocontrol approaches.

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裂解肺炎克雷伯菌的新型噬菌体BUCT_49532的特性和基因组分析。
噬菌体是一种在自然界中广泛分布的病毒,在选择性识别和感染细菌方面表现出非凡的能力。特别是,肺炎克雷伯菌被认为是导致医院感染的临床病原体,并经常产生多药耐药性。考虑到抗生素耐药性细菌的日益流行,噬菌体已成为一种引人注目的替代治疗方法。本研究以肺炎克雷伯菌K1119为宿主,从污水中分离出一种新的噬菌体BUCT_49532。电镜观察表明,BUCT_49532属于Caudoviricetes类。通过全基因组测序进一步分析表明,BUCT_49532是一种由长度为49532bp的线性双链DNA组成的杰杜纳病毒。基于平均核苷酸同一性(ANI)值的比较基因组学分析表明,BUCT_49532应被鉴定为一个新物种。噬菌体BUCT_49532具有良好的安全性、高环境稳定性和强裂解性能,是一个值得考虑的有趣案例。尽管其宿主范围相对较窄,但通过利用噬菌体鸡尾酒可以扩大其应用潜力,使其成为生物控制方法的一个有前途的候选者。
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来源期刊
Virus Genes
Virus Genes 医学-病毒学
CiteScore
3.30
自引率
0.00%
发文量
76
审稿时长
3 months
期刊介绍: Viruses are convenient models for the elucidation of life processes. The study of viruses is again on the cutting edge of biological sciences: systems biology, genomics, proteomics, metagenomics, using the newest most powerful tools. Huge amounts of new details on virus interactions with the cell, other pathogens and the hosts – animal (including human), insect, fungal, plant, bacterial, and archaeal - and their role in infection and disease are forthcoming in perplexing details requiring analysis and comments. Virus Genes is dedicated to the publication of studies on the structure and function of viruses and their genes, the molecular and systems interactions with the host and all applications derived thereof, providing a forum for the analysis of data and discussion of its implications, and the development of new hypotheses.
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