Transcriptome Profiling of Male Adult Angiostrongylus cantonensis.

IF 0.9 4区 医学 Q4 PARASITOLOGY Iranian Journal of Parasitology Pub Date : 2023-07-01 DOI:10.18502/ijpa.v18i3.13761
Guo Yue, Yu Liang Cao, Dong Ying, Zhou Hongchang, Shang Ya Qian, Zhang De Long, Chen Gao Qiang, Jiang Bei, Wu Wan Ting, Lu Mingke
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Abstract

Background: The pathogen of angiostrongyliasis is the parasite Angiostrongylus cantonensis, and the transcriptome profiling of the male adult was unclear. We aimed to understand how the male adults adapt, so the expression profile of A. cantonensis adult males was analyzed.

Methods: In order to improve the understanding of the transcriptome of adult males, RNA from three groups of male adult A. cantonensis was extracted and reverse transcribed to construct cDNA libraries. After sequencing, annotation of unigenes and transcripts was performed by querying the NR (Non-Redundant Protein Sequence Database), GO (Gene Ontology) and COG/KOG (Clusters of Orthologous Groups of proteins/euKaryotic Ortholog Groups) databases.

Results: For each group of adults, 43,260,894 raw reads and 43,200,341 clean reads were obtained. After successful assembly, 87,649 unigenes and 146,895 transcripts were obtained. Annotation of the unigenes and transcripts was identical and male adults expressed a series of genes encoding proteins specific to the male gender at the adult stage, such as proteins involved in energy metabolism, energy synthesis and transport. Expression of the ribosome pathway suggests a relationship with the physical activities during the adult male stage.

Conclusion: The transcriptome analysis is a good reference to understand further the expression profile of male adult A. cantonensis.

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广州管圆线虫雄性成虫的转录组分析。
背景:广州管圆线虫病的病原体是广东管圆线虫,雄性成虫的转录组图谱尚不清楚。我们的目的是了解成年雄性是如何适应的,因此分析了广州A.cantonensis成年雄性的表达谱。方法:为了提高对成年雄性转录组的理解,从三组雄性成年广州A.cantonensis中提取RNA并逆转录构建cDNA文库。测序后,通过查询NR(非冗余蛋白质序列数据库)、GO(基因本体论)和COG/KOG(蛋白质同源群簇/真核型同源群)数据库来进行单基因和转录物的注释。结果:每组成人获得43260894份原始读数和43200341份清洁读数。组装成功后,共获得87649个单基因和146895个转录本。单基因和转录物的注释是相同的,成年男性表达了一系列编码成年阶段男性特有蛋白质的基因,如参与能量代谢、能量合成和运输的蛋白质。核糖体途径的表达表明在成年男性阶段和身体活动有关。结论:转录组分析为进一步了解成年雄性广州a.cantonensis的表达谱提供了良好的参考。
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来源期刊
CiteScore
1.80
自引率
0.00%
发文量
55
审稿时长
6-12 weeks
期刊介绍: Iranian Journal of Parasitology (IJP) is the official publication of Iranian Society of Parasitology (ISP) launched in 2006. The society was inaugurated in 1994 and pursues the improvement of the knowledge on the parasites and parasitic diseases, exchange of scientific knowledge with foreign societies, publicity activities, and consultation on the parasitic diseases, and intimate relationship among society members. The main aims of the Journal are: contribution to the field of Parasitology, including all aspects of parasites and parasitic diseases (medical and veterinary) and related fields such as Entomology which may be submitted by scientists from Iran and all over the world.
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