Multidimensional LC–MS/MS analysis of liver proteins in rat, mouse and human microsomal and S9 fractions

Q4 Biochemistry, Genetics and Molecular Biology EuPA Open Proteomics Pub Date : 2015-03-01 DOI:10.1016/j.euprot.2015.01.003
Makan Golizeh, Christina Schneider, Leanne B. Ohlund, Lekha Sleno
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引用次数: 9

Abstract

Liver plays a key role in metabolism and detoxification, therefore analysis of its proteome is relevant for toxicology and drug discovery studies. To optimize for high proteome coverage, protein and peptide-level ion exchange fractionation were assessed using rat liver microsomes and S9 fractions. 2D-(SCX-RP)-LC–MS/MS analysis with peptide fractionation was subsequently employed for rat, mouse and human samples, yielding between 1400 and 1939 identified proteins, 58% of which were shared between species, and with relatively high sequence coverage. This rich dataset is specifically interesting for the toxicology community, and could serve as an excellent source for targeted assay development.

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大鼠、小鼠和人微粒体及S9部分肝脏蛋白的多维LC-MS /MS分析
肝脏在代谢和解毒中起着关键作用,因此分析其蛋白质组对毒理学和药物发现研究具有重要意义。为了优化高蛋白质组覆盖率,使用大鼠肝微粒体和S9组分评估了蛋白质和肽水平的离子交换分离。随后对大鼠、小鼠和人类样品采用2D-(SCX-RP)- lc - MS/MS多肽分离分析,得到1400 - 1939种鉴定蛋白,其中58%在物种之间共享,序列覆盖率相对较高。这个丰富的数据集对于毒理学社区来说特别有趣,并且可以作为靶向分析开发的极好来源。
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EuPA Open Proteomics
EuPA Open Proteomics Biochemistry, Genetics and Molecular Biology-Biochemistry
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期刊最新文献
Proceedings of the EuBIC-MS 2020 Developers’ Meeting Editorial: The next generation in (EuPA Open) Proteomics Aims & scope Proceedings of the EuBIC Winter School 2019 Introducing the YPIC challenge
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