n2v: A density-to-potential inversion suite. A sandbox for creating, testing, and benchmarking density functional theory inversion methods

IF 16.8 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Wiley Interdisciplinary Reviews: Computational Molecular Science Pub Date : 2022-04-03 DOI:10.1002/wcms.1617
Yuming Shi, Victor H. Chávez, Adam Wasserman
{"title":"n2v: A density-to-potential inversion suite. A sandbox for creating, testing, and benchmarking density functional theory inversion methods","authors":"Yuming Shi,&nbsp;Victor H. Chávez,&nbsp;Adam Wasserman","doi":"10.1002/wcms.1617","DOIUrl":null,"url":null,"abstract":"<p>From the most fundamental to the most practical side of density functional theory (DFT), Kohn–Sham inversions (iKS) can contribute to the development of functional approximations and shed light on their performance and limitations. On the one hand, iKS allows for the direct exploration of the Hohenberg–Kohn and Runge–Gross density-to-potential mappings that provide the foundations for DFT and time-dependent DFT. On the other hand, iKS can guide the analysis and development of approximate exchange–correlation and noninteracting kinetic energy functionals, and diagnose their errors. iKS can also play a similar role in the development of nonadditive functionals for modern density-based embedding methods. Various strategies to perform iKS calculations have been explored since the inception of DFT. We introduce <i>n2v</i>, a density-to-potential inversion Python module that is capable of performing the most useful and state-of-the-art inversion calculations. Currently based on <i>NumPy</i>, <i>n2v</i> was developed to be easy to learn by newcomers to the field. Its structure allows for other inversion methods to be easily added. The code offers a general interface that gives the freedom to use different software packages in the computational molecular sciences (CMS) community, and the current release supports the <i>Psi4</i> and <i>PySCF</i> packages. Six inversion methods have been implemented into <i>n2v</i> and are reviewed here along with detailed numerical illustrations on molecules with numbers of electrons ranging from ~10 to ~100.</p><p>This article is categorized under:\n </p>","PeriodicalId":236,"journal":{"name":"Wiley Interdisciplinary Reviews: Computational Molecular Science","volume":null,"pages":null},"PeriodicalIF":16.8000,"publicationDate":"2022-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/wcms.1617","citationCount":"8","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Wiley Interdisciplinary Reviews: Computational Molecular Science","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/wcms.1617","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 8

Abstract

From the most fundamental to the most practical side of density functional theory (DFT), Kohn–Sham inversions (iKS) can contribute to the development of functional approximations and shed light on their performance and limitations. On the one hand, iKS allows for the direct exploration of the Hohenberg–Kohn and Runge–Gross density-to-potential mappings that provide the foundations for DFT and time-dependent DFT. On the other hand, iKS can guide the analysis and development of approximate exchange–correlation and noninteracting kinetic energy functionals, and diagnose their errors. iKS can also play a similar role in the development of nonadditive functionals for modern density-based embedding methods. Various strategies to perform iKS calculations have been explored since the inception of DFT. We introduce n2v, a density-to-potential inversion Python module that is capable of performing the most useful and state-of-the-art inversion calculations. Currently based on NumPy, n2v was developed to be easy to learn by newcomers to the field. Its structure allows for other inversion methods to be easily added. The code offers a general interface that gives the freedom to use different software packages in the computational molecular sciences (CMS) community, and the current release supports the Psi4 and PySCF packages. Six inversion methods have been implemented into n2v and are reviewed here along with detailed numerical illustrations on molecules with numbers of electrons ranging from ~10 to ~100.

This article is categorized under:

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
n2v:密度对电位反演套件。一个沙盒创建,测试,和基准密度泛函理论反演方法
从密度泛函理论(DFT)的最基本到最实用的方面,Kohn-Sham反演(iKS)可以促进泛函近似的发展,并阐明其性能和局限性。一方面,iKS允许直接探索Hohenberg-Kohn和Runge-Gross密度到势的映射,这些映射为DFT和时间相关DFT提供了基础。另一方面,iKS可以指导近似交换相关和非相互作用动能泛函的分析和开发,并诊断其错误。iKS也可以在现代基于密度的嵌入方法的非加性泛函的发展中发挥类似的作用。自DFT开始以来,已经探索了各种执行iKS计算的策略。我们介绍n2v,一个密度-势反演Python模块,能够执行最有用和最先进的反演计算。目前基于NumPy, n2v被开发为易于新手学习的领域。它的结构允许很容易地添加其他反演方法。该代码提供了一个通用接口,可以自由地使用计算分子科学(CMS)社区中的不同软件包,当前版本支持Psi4和PySCF包。六种反演方法已经在n2v中实现,并在这里进行了详细的数值说明,电子数从~10到~100不等。本文分类如下:
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Wiley Interdisciplinary Reviews: Computational Molecular Science
Wiley Interdisciplinary Reviews: Computational Molecular Science CHEMISTRY, MULTIDISCIPLINARY-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
28.90
自引率
1.80%
发文量
52
审稿时长
6-12 weeks
期刊介绍: Computational molecular sciences harness the power of rigorous chemical and physical theories, employing computer-based modeling, specialized hardware, software development, algorithm design, and database management to explore and illuminate every facet of molecular sciences. These interdisciplinary approaches form a bridge between chemistry, biology, and materials sciences, establishing connections with adjacent application-driven fields in both chemistry and biology. WIREs Computational Molecular Science stands as a platform to comprehensively review and spotlight research from these dynamic and interconnected fields.
期刊最新文献
Catalysis in the digital age: Unlocking the power of data with machine learning Modern chemical graph theory Issue Information Molecular dynamics simulations of nucleosomes are coming of age Transformer technology in molecular science
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1