MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

IF 1.4 4区 农林科学 Q3 AGRONOMY Communications in Soil Science and Plant Analysis Pub Date : 2015-11-01 Epub Date: 2015-10-31 DOI:10.1107/S1399004715017927
Ulrich Zander, Gleb Bourenkov, Alexander N Popov, Daniele de Sanctis, Olof Svensson, Andrew A McCarthy, Ekaterina Round, Valentin Gordeliy, Christoph Mueller-Dieckmann, Gordon A Leonard
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Abstract

Here, an automated procedure is described to identify the positions of many cryocooled crystals mounted on the same sample holder, to rapidly predict and rank their relative diffraction strengths and to collect partial X-ray diffraction data sets from as many of the crystals as desired. Subsequent hierarchical cluster analysis then allows the best combination of partial data sets, optimizing the quality of the final data set obtained. The results of applying the method developed to various systems and scenarios including the compilation of a complete data set from tiny crystals of the membrane protein bacteriorhodopsin and the collection of data sets for successful structure determination using the single-wavelength anomalous dispersion technique are also presented.

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MeshAndCollect:同步加速器大分子晶体学光束线的自动多晶体数据采集工作流程。
本文介绍了一种自动程序,可用于确定安装在同一样品支架上的许多低温冷却晶体的位置,快速预测和排列它们的相对衍射强度,并根据需要从众多晶体中收集部分 X 射线衍射数据集。随后的分层聚类分析可对部分数据集进行最佳组合,优化最终数据集的质量。此外,还介绍了将所开发的方法应用于各种系统和情况的结果,包括从膜蛋白细菌眼色素的微小晶体中汇编完整的数据集,以及利用单波长反常色散技术收集数据集以成功确定结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
3.30
自引率
5.60%
发文量
276
审稿时长
9.9 months
期刊介绍: International in coverage, Communications in Soil Science and Plant Analysis presents recent advances in plant and soil science, emphasizing on methods of analysis and interpretation of elemental content of soils and plants and plant nutrition. The Journal emphasizes agronomic and plantation crops with topics ranging from nutrition and methodology to precision agriculture, sustainable use of land and water resources, and increasing yield. Additional topics that are also covered in Communications in Soil Science and Plant Analysis : adverse growing conditions dealing with salinity and drought tolerance and their effects on crop yields soil chemistry; mineralogy; fertility and testing of soils; soil-crop nutrition; plant analysis; interpretation and correlation of soil tests and plant analyses; liming and fertilization of soils; and techniques for correcting deficiencies. Scientists and crop consultants around the world benefit from the research published in Communications in Soil Science and Plant Analysis . The research can be utilized to further educational research programs and may also be applied to field operations, which are continuously changing and expanding based upon the peer reviewed research conducted and published in the journal.
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