Haipeng Shi;Huan Chen;Qinghong Yang;Jun Wang;Haihe Shi
{"title":"A Method for Bio-Sequence Analysis Algorithm Development Based on the PAR Platform","authors":"Haipeng Shi;Huan Chen;Qinghong Yang;Jun Wang;Haihe Shi","doi":"10.26599/BDMA.2022.9020030","DOIUrl":null,"url":null,"abstract":"The problems of biological sequence analysis have great theoretical and practical value in modern bioinformatics. Numerous solving algorithms are used for these problems, and complex similarities and differences exist among these algorithms for the same problem, causing difficulty for researchers to select the appropriate one. To address this situation, combined with the formal partition-and-recur method, component technology, domain engineering, and generic programming, the paper presents a method for the development of a family of biological sequence analysis algorithms. It designs highly trustworthy reusable domain algorithm components and further assembles them to generate specifific biological sequence analysis algorithms. The experiment of the development of a dynamic programming based LCS algorithm family shows the proposed method enables the improvement of the reliability, understandability, and development efficiency of particular algorithms.","PeriodicalId":52355,"journal":{"name":"Big Data Mining and Analytics","volume":"6 1","pages":"11-20"},"PeriodicalIF":7.7000,"publicationDate":"2022-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ieeexplore.ieee.org/iel7/8254253/9962810/09962956.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Big Data Mining and Analytics","FirstCategoryId":"1093","ListUrlMain":"https://ieeexplore.ieee.org/document/9962956/","RegionNum":1,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0
Abstract
The problems of biological sequence analysis have great theoretical and practical value in modern bioinformatics. Numerous solving algorithms are used for these problems, and complex similarities and differences exist among these algorithms for the same problem, causing difficulty for researchers to select the appropriate one. To address this situation, combined with the formal partition-and-recur method, component technology, domain engineering, and generic programming, the paper presents a method for the development of a family of biological sequence analysis algorithms. It designs highly trustworthy reusable domain algorithm components and further assembles them to generate specifific biological sequence analysis algorithms. The experiment of the development of a dynamic programming based LCS algorithm family shows the proposed method enables the improvement of the reliability, understandability, and development efficiency of particular algorithms.
期刊介绍：
Big Data Mining and Analytics, a publication by Tsinghua University Press, presents groundbreaking research in the field of big data research and its applications. This comprehensive book delves into the exploration and analysis of vast amounts of data from diverse sources to uncover hidden patterns, correlations, insights, and knowledge.
Featuring the latest developments, research issues, and solutions, this book offers valuable insights into the world of big data. It provides a deep understanding of data mining techniques, data analytics, and their practical applications.
Big Data Mining and Analytics has gained significant recognition and is indexed and abstracted in esteemed platforms such as ESCI, EI, Scopus, DBLP Computer Science, Google Scholar, INSPEC, CSCD, DOAJ, CNKI, and more.
With its wealth of information and its ability to transform the way we perceive and utilize data, this book is a must-read for researchers, professionals, and anyone interested in the field of big data analytics.
京公网安备 11010802042870号
京ICP备2023020795号-1
分享
求助内容：
应助结果提醒方式：
扫码关注我们
