Improvement and Evaluation of a Mathematical Model for Fertilization Calcium Waves in Caenorhabditis Elegans

Q3 Biochemistry, Genetics and Molecular Biology IPSJ Transactions on Bioinformatics Pub Date : 2018-01-01 DOI:10.2197/IPSJTBIO.11.24
Momoko Imakubo, Jun Takayama, Shuichi Onami
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Abstract

Ca2+ waves propagate through the oocyte during fertilization, activate the oocyte and induce embryonic development. Ca2+-induced Ca2+-release (CICR) is a mechanism of Ca2+ wave formation. We previously quantified the Ca2+ waves in the nematode Caenorhabditis elegans by using high-speed imaging and image analysis. We found that the waves consist of a rapid local rise at the point of sperm entry and a slow global wave. We demonstrated that the Nagumo model, which models the CICR by a reaction–diffusion equation, can produce a similar biphasic waveform. However, the model cannot represent the observed gradual decrease in maximum Ca2+ concentration with increasing distance from the point of sperm entry. In this study, we introduced a linear monotonically decreasing function into the reaction part of the Nagumo model. We demonstrated that our new model can produce the gradual decrease in maximum Ca2+ concentration with increasing distance from the point of sperm entry and a biphasic waveform simultaneously.
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秀丽隐杆线虫受精钙波数学模型的改进与评价
Ca2+波在受精过程中通过卵母细胞传播,激活卵母细胞并诱导胚胎发育。Ca2+诱导的Ca2+释放(CICR)是Ca2+波形成的一种机制。我们之前量化了秀丽隐杆线虫的Ca2+波使用高速成像和图像分析。我们发现,这些波包括精子进入点的局部快速上升和缓慢的全局波。我们证明了Nagumo模型,通过反应扩散方程来模拟CICR,可以产生类似的双相波形。然而,该模型不能代表观察到的最大Ca2+浓度随着距离精子进入点的增加而逐渐降低。在本研究中,我们在Nagumo模型的反应部分引入一个线性单调递减函数。我们证明了我们的新模型可以产生最大Ca2+浓度随精子进入点距离的增加而逐渐降低,同时出现双相波形。
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来源期刊
IPSJ Transactions on Bioinformatics
IPSJ Transactions on Bioinformatics Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (miscellaneous)
CiteScore
1.90
自引率
0.00%
发文量
3
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