A standardized and efficient technique to estimate seed traits in plants with numerous small propagules

IF 2.7 3区 生物学 Q2 PLANT SCIENCES Applications in Plant Sciences Pub Date : 2023-10-31 DOI:10.1002/aps3.11552
Christina Steinecke, Jeremiah Lee, Jannice Friedman
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引用次数: 1

Abstract

Premise

Variation in seed traits is common within and among populations of plant species and often has ecological and evolutionary implications. However, due to the time-consuming nature of manual seed measurements and the level of variability in imaging techniques, quantifying and interpreting the extent of seed variation can be challenging.

Methods

We developed a standardized high-throughput technique to measure seed number, as well as individual seed area and color, using a derived empirical scale to constrain area in Arabidopsis thaliana, Brassica rapa, and Mimulus guttatus. We develop a specific rational model using seed area measured at various spatial scales relative to the pixel count, observing the asymptotic value of the seed area as the modeled number of pixels approaches infinity.

Results

We found that our model has high reliability in estimating seed traits and efficiently processes large numbers of images, facilitating the quantification of seed traits in studies with large sample sizes.

Discussion

This technique facilitates consistency between imaging sessions and standardizes the measurement of seed traits. These novel advances allow researchers to directly and reliably measure seed traits, which will enable tests of the ecological and evolutionary causes of their variation.

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一种标准化和高效的技术,用于评估具有大量小型繁殖体的植物的种子性状。
前提:种子性状的变异在植物种群内部和种群之间很常见,通常具有生态和进化意义。然而,由于人工种子测量的耗时性和成像技术的可变性,量化和解释种子变异的程度可能具有挑战性。方法:我们开发了一种标准化的高通量技术来测量种子数量,以及单个种子的面积和颜色,使用推导的经验量表来限制拟南芥、雷帕菜和金龟子的面积。我们使用在相对于像素计数的各种空间尺度上测量的种子面积来开发一个特定的有理模型,观察当建模的像素数量接近无穷大时种子面积的渐近值。结果:我们发现,我们的模型在估计种子性状方面具有很高的可靠性,并有效地处理了大量图像,有助于在大样本量的研究中量化种子性状。讨论:这项技术有助于成像会议之间的一致性,并使种子性状的测量标准化。这些新进展使研究人员能够直接可靠地测量种子性状,从而能够测试其变异的生态和进化原因。
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来源期刊
CiteScore
7.30
自引率
0.00%
发文量
50
审稿时长
12 weeks
期刊介绍: Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences. APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.
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