Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph.

IF 1.6 3区 工程技术 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Biomedical Semantics Pub Date : 2023-11-02 DOI:10.1186/s13326-023-00297-5
Elli Papadopoulou, Alessia Bardi, George Kakaletris, Diamadis Tziotzios, Paolo Manghi, Natalia Manola
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引用次数: 0

Abstract

Background: Open Science Graphs (OSGs) are scientific knowledge graphs representing different entities of the research lifecycle (e.g. projects, people, research outcomes, institutions) and the relationships among them. They present a contextualized view of current research that supports discovery, re-use, reproducibility, monitoring, transparency and omni-comprehensive assessment. A Data Management Plan (DMP) contains information concerning both the research processes and the data collected, generated and/or re-used during a project's lifetime. Automated solutions and workflows that connect DMPs with the actual data and other contextual information (e.g., publications, fundings) are missing from the landscape. DMPs being submitted as deliverables also limit their findability. In an open and FAIR-enabling research ecosystem information linking between research processes and research outputs is essential. ARGOS tool for FAIR data management contributes to the OpenAIRE Research Graph (RG) and utilises its underlying services and trusted sources to progressively automate validation and automations of Research Data Management (RDM) practices.

Results: A comparative analysis was conducted between the data models of ARGOS and OpenAIRE Research Graph against the DMP Common Standard. Following this, we extended ARGOS with export format converters and semantic tagging, and the OpenAIRE RG with a DMP entity and semantics between existing entities and relationships. This enabled the integration of ARGOS machine actionable DMPs (ma-DMPs) to the OpenAIRE OSG, enriching and exposing DMPs as FAIR outputs.

Conclusions: This paper, to our knowledge, is the first to introduce exposing ma-DMPs in OSGs and making the link between OSGs and DMPs, introducing the latter as entities in the research lifecycle. Further, it provides insight to ARGOS DMP service interoperability practices and integrations to populate the OpenAIRE Research Graph with DMP entities and relationships and strengthen both FAIRness of outputs as well as information exchange in a standard way.

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数据管理计划作为链接的开放数据:利用OpenAIRE研究图中的ARGOS FAIR和机器可操作输出。
背景:开放科学图(OSG)是代表研究生命周期的不同实体(如项目、人员、研究成果、机构)及其之间关系的科学知识图。他们提出了当前研究的背景观点,支持发现、重复使用、再现性、监测、透明度和全方位综合评估。数据管理计划(DMP)包含有关研究过程以及在项目生命周期内收集、生成和/或重复使用的数据的信息。将DMP与实际数据和其他上下文信息(如出版物、资助)连接起来的自动化解决方案和工作流程在这一领域中缺失。DMP作为可交付成果提交也限制了其可查找性。在一个开放和FAIR的研究生态系统中,研究过程和研究产出之间的信息联系至关重要。用于FAIR数据管理的ARGOS工具有助于OpenAIRE研究图(RG),并利用其底层服务和可信来源逐步自动化研究数据管理(RDM)实践的验证和自动化。结果:ARGOS和OpenAIRE Research Graph的数据模型与DMP通用标准进行了比较分析。在此之后,我们使用导出格式转换器和语义标记扩展了ARGOS,并使用DMP实体和现有实体和关系之间的语义扩展了OpenAIRE RG。这使得ARGOS机器可操作DMP(ma DMP)能够集成到OpenAIRE OSG,丰富并公开DMP作为FAIR输出。结论:据我们所知,本文首次介绍了在OSG中暴露ma DMP,并在OSG和DMP之间建立联系,将后者作为研究生命周期中的实体引入。此外,它还深入了解了ARGOS DMP服务互操作性实践和集成,以用DMP实体和关系填充OpenAIRE研究图,并以标准方式加强输出的公平性和信息交换。
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来源期刊
Journal of Biomedical Semantics
Journal of Biomedical Semantics MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
4.20
自引率
5.30%
发文量
28
审稿时长
30 weeks
期刊介绍: Journal of Biomedical Semantics addresses issues of semantic enrichment and semantic processing in the biomedical domain. The scope of the journal covers two main areas: Infrastructure for biomedical semantics: focusing on semantic resources and repositories, meta-data management and resource description, knowledge representation and semantic frameworks, the Biomedical Semantic Web, and semantic interoperability. Semantic mining, annotation, and analysis: focusing on approaches and applications of semantic resources; and tools for investigation, reasoning, prediction, and discoveries in biomedicine.
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