{"title":"Efficient parallel branch-and-bound approaches for exact graph edit distance problem","authors":"Adel Dabah , Ibrahim Chegrane , Saïd Yahiaoui , Ahcene Bendjoudi , Nadia Nouali-Taboudjemat","doi":"10.1016/j.parco.2022.102984","DOIUrl":null,"url":null,"abstract":"<div><p><span>Graph Edit Distance (GED) is a well-known measure used in the graph matching to measure the similarity/dissimilarity between two graphs by computing the minimum cost of edit operations needed to transform one graph into another. This process, Which appears to be simple, is known NP-hard and time consuming since the search space is increasing exponentially. One way to optimally solve this problem is by using Branch and Bound (B&B) algorithms, Which reduce the computation time required to explore the whole search space by performing an implicit enumeration of the search space instead of an exhaustive one based on a pruning technique. nevertheless, They remain inefficient when dealing with large problem instances due to the impractical running time needed to explore the whole search space. To overcome this issue, We propose in this paper three parallel B&B approaches based on shared memory to exploit the multi-core CPU processors: First, a work-stealing approach where several instances of the B&B algorithm explore a single search tree concurrently achieving speedups up to 24</span><span><math><mo>×</mo></math></span> faster than the sequential version. Second, a tree-based approach where multiple parts of the search tree are explored simultaneously by independent B&B instances achieving speedups up to 28<span><math><mo>×</mo></math></span>. Finally, Due to the irregular nature of the GED problem, two load-balancing strategies are proposed to ensure a fair workload between parallel processes achieving impressive speedups up to 300<span><math><mo>×</mo></math></span>. all experiments have been carried out on well-known datasets</p></div>","PeriodicalId":54642,"journal":{"name":"Parallel Computing","volume":"114 ","pages":"Article 102984"},"PeriodicalIF":2.0000,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Parallel Computing","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167819122000734","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, THEORY & METHODS","Score":null,"Total":0}
引用次数: 2
Abstract
Graph Edit Distance (GED) is a well-known measure used in the graph matching to measure the similarity/dissimilarity between two graphs by computing the minimum cost of edit operations needed to transform one graph into another. This process, Which appears to be simple, is known NP-hard and time consuming since the search space is increasing exponentially. One way to optimally solve this problem is by using Branch and Bound (B&B) algorithms, Which reduce the computation time required to explore the whole search space by performing an implicit enumeration of the search space instead of an exhaustive one based on a pruning technique. nevertheless, They remain inefficient when dealing with large problem instances due to the impractical running time needed to explore the whole search space. To overcome this issue, We propose in this paper three parallel B&B approaches based on shared memory to exploit the multi-core CPU processors: First, a work-stealing approach where several instances of the B&B algorithm explore a single search tree concurrently achieving speedups up to 24 faster than the sequential version. Second, a tree-based approach where multiple parts of the search tree are explored simultaneously by independent B&B instances achieving speedups up to 28. Finally, Due to the irregular nature of the GED problem, two load-balancing strategies are proposed to ensure a fair workload between parallel processes achieving impressive speedups up to 300. all experiments have been carried out on well-known datasets
图编辑距离(GED)是图匹配中常用的度量方法,通过计算将一个图转换为另一个图所需的最小编辑操作成本来度量两个图之间的相似性/不相似性。这个过程看起来很简单,但由于搜索空间呈指数级增长,因此它是np困难且耗时的。最优解决这个问题的一种方法是使用Branch and Bound (B&B)算法,该算法通过执行搜索空间的隐式枚举而不是基于修剪技术的穷尽枚举来减少探索整个搜索空间所需的计算时间。然而,由于探索整个搜索空间所需的不切实际的运行时间,它们在处理大型问题实例时仍然效率低下。为了克服这个问题,我们在本文中提出了三种基于共享内存的并行B&B方法来利用多核CPU处理器:首先,一种工作窃取方法,其中B&B算法的多个实例并发地探索单个搜索树,其速度比顺序版本快24倍。第二种是基于树的方法,通过独立的B&B实例同时探索搜索树的多个部分,实现高达28倍的加速。最后,由于GED问题的不规则性,提出了两种负载平衡策略来确保并行进程之间的公平工作负载,从而实现高达300倍的惊人加速。所有的实验都是在已知的数据集上进行的
期刊介绍:
Parallel Computing is an international journal presenting the practical use of parallel computer systems, including high performance architecture, system software, programming systems and tools, and applications. Within this context the journal covers all aspects of high-end parallel computing from single homogeneous or heterogenous computing nodes to large-scale multi-node systems.
Parallel Computing features original research work and review articles as well as novel or illustrative accounts of application experience with (and techniques for) the use of parallel computers. We also welcome studies reproducing prior publications that either confirm or disprove prior published results.
Particular technical areas of interest include, but are not limited to:
-System software for parallel computer systems including programming languages (new languages as well as compilation techniques), operating systems (including middleware), and resource management (scheduling and load-balancing).
-Enabling software including debuggers, performance tools, and system and numeric libraries.
-General hardware (architecture) concepts, new technologies enabling the realization of such new concepts, and details of commercially available systems
-Software engineering and productivity as it relates to parallel computing
-Applications (including scientific computing, deep learning, machine learning) or tool case studies demonstrating novel ways to achieve parallelism
-Performance measurement results on state-of-the-art systems
-Approaches to effectively utilize large-scale parallel computing including new algorithms or algorithm analysis with demonstrated relevance to real applications using existing or next generation parallel computer architectures.
-Parallel I/O systems both hardware and software
-Networking technology for support of high-speed computing demonstrating the impact of high-speed computation on parallel applications