Recent Advancements in Computational Drug Design Algorithms through Machine Learning and Optimization

Soham Choudhuri, Manas Yendluri, Sudip Poddar, Aimin Li, Koushik Mallick, Saurav Mallik, B. Ghosh
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引用次数: 1

Abstract

The goal of drug discovery is to uncover new molecules with specific chemical properties that can be used to cure diseases. With the accessibility of machine learning techniques, the approach used in this search has become a significant component in computer science in recent years. To meet the Precision Medicine Initiative’s goals and the additional obstacles that they have created, it is vital to develop strong, consistent, and repeatable computational approaches. Predictive models based on machine learning are becoming increasingly crucial in preclinical investigations. In discovering novel pharmaceuticals, this step substantially reduces expenses and research times. The human kinome contains various kinase enzymes that play vital roles through catalyzing protein phosphorylation. Interestingly, the dysregulation of kinases causes various human diseases, viz., cancer, cardiovascular disease, and several neuro-degenerative disorders. Thus, inhibitors of specific kinases can treat those diseases through blocking their activity as well as restoring normal cellular signaling. This review article discusses recent advancements in computational drug design algorithms through machine learning and deep learning and the computational drug design of kinase enzymes. Analyzing the current state-of-the-art in this sector will offer us a sense of where cheminformatics may evolve in the near future and the limitations and beneficial outcomes it has produced. The approaches utilized to model molecular data, the biological problems addressed, and the machine learning algorithms employed for drug discovery in recent years will be the emphasis of this review.
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基于机器学习和优化的计算药物设计算法的最新进展
药物发现的目标是发现具有特定化学性质的新分子,这些新分子可用于治疗疾病。随着机器学习技术的普及,这种搜索方法近年来已成为计算机科学的重要组成部分。为了满足精准医疗计划的目标和他们创造的额外障碍,开发强大、一致和可重复的计算方法至关重要。基于机器学习的预测模型在临床前研究中变得越来越重要。在发现新药时,这一步骤大大减少了费用和研究时间。人类激酶组包含多种激酶酶,通过催化蛋白质磷酸化发挥重要作用。有趣的是,激酶的失调会导致各种人类疾病,如癌症、心血管疾病和几种神经退行性疾病。因此,特定激酶的抑制剂可以通过阻断其活性以及恢复正常的细胞信号传导来治疗这些疾病。本文综述了通过机器学习和深度学习的计算药物设计算法以及激酶的计算药物设计的最新进展。分析这一领域的最新技术将使我们了解化学信息学在不久的将来可能发展的方向,以及它所产生的局限性和有益的结果。近年来用于分子数据建模的方法、解决的生物学问题以及用于药物发现的机器学习算法将是本综述的重点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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