Exploring Organic Chemistry with DFT: Radical, Organo‐metallic, and Bio‐organic Applications

F. Bernardi, A. Bottoni, M. Garavelli
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引用次数: 21

Abstract

In this review we report the results of DFT investigations which have been carried out in different fields of organic and organometallic chemistry, including radical reactivity, structure and reactivity of organometallic compounds, and biochemical/biophysical properties of long chain unsaturated systems. Many of the most popular non-local corrected functionals (e.g. B3LYP, BHLYP, BLYP, BP86) have been benchmarked both versus experimental and high level ab initio (e.g. MP2, MP4, CAS-SCF/CAS-PT2) data, resulting in an impressive agreement. The DFT approach appears to be a powerful tool, which can be used as a valid alternative to more traditional correlated methods, to achieve mechanistic information of chemical/ physical interest in the modelling of organic and biochemical systems. In particular, in the examples selected in this review, we discuss the results obtained for the addition reaction of alkyl radicals to double bonds and for the hydrogen/ chlorine abstraction reaction by alkyl and silyl radicals from various organic substrates. Moreover, binding interactions (i.e. geometries and energies) in organometallic compounds are shown to be satisfactorily reproduced via DFT and examples of nickel-catalyzed [2 + 2] cycloaddition reaction and homogeneous Ziegler-Natta catalysis are investigated. Finally, a DFT modelling for the singlet-oxygen quenching ability and radical trapping activity of carotenes is presented. The simulated data provide a rationale for the protective action of carotenes observed in biological tissues and elucidates the physical and chemical mechanisms involved in the reactivity of carotenes versus oxygen and radicals.
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用DFT探索有机化学:自由基、有机金属和生物有机的应用
本文综述了DFT在有机化学和金属有机化学不同领域的研究成果,包括自由基反应性、金属有机化合物的结构和反应性以及长链不饱和体系的生化/生物物理性质。许多最流行的非局部校正函数(如B3LYP、BHLYP、BLYP、BP86)已经与实验和高水平从头计算(如MP2、MP4、CAS-SCF/CAS-PT2)数据进行了基准测试,结果令人印象深刻。DFT方法似乎是一个强大的工具,它可以作为更传统的相关方法的有效替代,在有机和生化系统的建模中获得化学/物理感兴趣的机械信息。特别地,在本文所选的例子中,我们讨论了烷基自由基与双键加成反应的结果,以及烷基和硅基自由基从各种有机底物中提取氢/氯反应的结果。此外,有机金属化合物中的结合相互作用(即几何形状和能量)通过DFT得到了令人满意的再现,并研究了镍催化的[2 + 2]环加成反应和均相齐格勒-纳塔催化的例子。最后,提出了胡萝卜素单线态氧猝灭能力和自由基捕获活性的DFT模型。模拟数据为在生物组织中观察到的胡萝卜素的保护作用提供了理论依据,并阐明了胡萝卜素对氧和自由基反应性的物理和化学机制。
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