Regression Analysis and Docking Study of Pyrimidine Based Compounds as anti-Tuberculosis Therapeutic Agents

A. Parmar, M. R. Patle
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Abstract

Received: 09/Apr/2019, Accepted: 19/Apr/2019, Online: 30/Apr/2019 AbstractIn the drug-design process, structure activity relationship is an important tool for estimation of biological activity of the unknown compounds. In this process, the objective is development of a relationship between structural features of molecules and the property of interest i. e. biological activity. On the basis of this relationship, the biological activity can be predicted for new candidate structures. Initially, the forty two substituted pyrimidine molecules with known biological activities were considered as known set for regression analysis model building purpose. The properties module from Datawarrior used to calculate descriptors. Structure activity model indicates that these descriptors have significant relationships with observed bioactivity. We have observed a high relationship between experimental and predicted activity values, indicating the validation and the excellent quality of the derived model. In the present study, the new substituted pyrimidine molecules are designed, optimized and their descriptors were calculated using Datawarrior modules. Then by using the Regression analysis model, their biological activities are studied as well as inhibition studies for the 1QPQ by molecular docking method are also carried out. Thus on the basis of regression analysis study and docking study of substituted pyrimidine derivatives, we can conclude that these compounds on further studies may prove to be therapeutic agent against tuberculosis.
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嘧啶类化合物抗结核治疗药物的回归分析与对接研究
摘要在药物设计过程中,结构-活性关系是评价未知化合物生物活性的重要工具。在这个过程中,目标是发展分子的结构特征和感兴趣的性质(即生物活性)之间的关系。根据这一关系,可以预测新的候选结构的生物活性。最初,将已知具有生物活性的42个取代嘧啶分子作为已知集合,用于建立回归分析模型。来自Datawarrior的用于计算描述符的属性模块。结构活性模型表明,这些描述符与观察到的生物活性有显著关系。我们观察到实验和预测活度值之间有很高的关系,表明推导模型的有效性和优良的质量。本研究利用Datawarrior模块对新取代的嘧啶分子进行了设计、优化,并计算了它们的描述符。然后利用回归分析模型对其生物活性进行研究,并通过分子对接方法对1QPQ的抑制作用进行研究。因此,在对取代嘧啶衍生物的回归分析研究和对接研究的基础上,我们可以得出结论,这些化合物在进一步的研究中可能被证明是结核病的治疗剂。
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