DCAE-UNET: IMPROVED OPTIC DISC SEGMENTATION MODEL USING SEMI-SUPERVISED DEEP DILATED CONVOLUTION AUTOENCODER-BASED MODIFIED U-NET

R. Shalini, V. Gopi
{"title":"DCAE-UNET: IMPROVED OPTIC DISC SEGMENTATION MODEL USING SEMI-SUPERVISED DEEP DILATED CONVOLUTION AUTOENCODER-BASED MODIFIED U-NET","authors":"R. Shalini, V. Gopi","doi":"10.4015/s1016237223500254","DOIUrl":null,"url":null,"abstract":"An accurate assessment of the morphological characteristics of the Optic Disc (OD) is essential for the diagnosis of various retinal disorders. It is necessary to segment the OD precisely to detect structural OD changes associated with visual field loss. Although deep learning models are effective for this task, they require extensive labeled datasets, which can be time-consuming and costly. Furthermore, fundus images have multi-scale features, making segmentation challenging. In this study, we present a semi-supervised and transfer learning approach for OD segmentation. Our approach utilizes an im-proved Dilated Convolutional AutoEncoder (DCAE) and a pre-trained modified U-Net to segment the OD. The DCAE seg-ments the OD using feature similarity from unlabeled images in the Messidor dataset and saves the learned weights. Trans-fer learning is then applied to reuse the model weights in the U-Net, accelerating training on small datasets such as Drions-DB and Drishti-GS. The network architecture was modified by increasing the layers from 8 to 128 and halving the feature map length and width. To address the multi-scale challenge without inflating the model parameters, we introduce the Dilated Hierarchical Feature Extraction Module (DHFEM), a convolutional module capable of achieving multi-scale feature extraction without increasing model parameters. Additionally, DHFEM incorporates convolutional layers with varying recep-tive fields, further enhancing the network ability to extract features across multiple scales. Our OD segmentation method outperforms existing algorithms with reduced parameter quantities of 0.4 M. The mean Intersection over Union (mIoU) values are 0.9383 and 0.9629 and inference times of 45 ms and 40 ms for the Drions-DB and Drishti-GS datasets, respectively.","PeriodicalId":8862,"journal":{"name":"Biomedical Engineering: Applications, Basis and Communications","volume":"49 1","pages":""},"PeriodicalIF":0.6000,"publicationDate":"2023-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Engineering: Applications, Basis and Communications","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4015/s1016237223500254","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

Abstract

An accurate assessment of the morphological characteristics of the Optic Disc (OD) is essential for the diagnosis of various retinal disorders. It is necessary to segment the OD precisely to detect structural OD changes associated with visual field loss. Although deep learning models are effective for this task, they require extensive labeled datasets, which can be time-consuming and costly. Furthermore, fundus images have multi-scale features, making segmentation challenging. In this study, we present a semi-supervised and transfer learning approach for OD segmentation. Our approach utilizes an im-proved Dilated Convolutional AutoEncoder (DCAE) and a pre-trained modified U-Net to segment the OD. The DCAE seg-ments the OD using feature similarity from unlabeled images in the Messidor dataset and saves the learned weights. Trans-fer learning is then applied to reuse the model weights in the U-Net, accelerating training on small datasets such as Drions-DB and Drishti-GS. The network architecture was modified by increasing the layers from 8 to 128 and halving the feature map length and width. To address the multi-scale challenge without inflating the model parameters, we introduce the Dilated Hierarchical Feature Extraction Module (DHFEM), a convolutional module capable of achieving multi-scale feature extraction without increasing model parameters. Additionally, DHFEM incorporates convolutional layers with varying recep-tive fields, further enhancing the network ability to extract features across multiple scales. Our OD segmentation method outperforms existing algorithms with reduced parameter quantities of 0.4 M. The mean Intersection over Union (mIoU) values are 0.9383 and 0.9629 and inference times of 45 ms and 40 ms for the Drions-DB and Drishti-GS datasets, respectively.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Dcae-unet:基于半监督深度扩张卷积自编码器的改进u-net视盘分割模型
准确评估视盘(OD)的形态特征对各种视网膜疾病的诊断至关重要。为了检测与视野丧失相关的结构外径变化,有必要精确地分割外径。虽然深度学习模型对这项任务是有效的,但它们需要大量的标记数据集,这可能是耗时和昂贵的。此外,眼底图像具有多尺度特征,这给分割带来了挑战。在这项研究中,我们提出了一种半监督和迁移学习的OD分割方法。我们的方法利用改进的扩展卷积自动编码器(DCAE)和预训练的改进U-Net来分割OD。DCAE利用Messidor数据集中未标记图像的特征相似性对OD进行分割,并保存学习到的权值。然后应用迁移学习来重用U-Net中的模型权重,加速在Drions-DB和Drishti-GS等小数据集上的训练。通过将层数从8层增加到128层,并将特征映射的长度和宽度减半来修改网络结构。为了在不增加模型参数的情况下解决多尺度挑战,我们引入了扩展分层特征提取模块(DHFEM),这是一个卷积模块,能够在不增加模型参数的情况下实现多尺度特征提取。此外,DHFEM结合了具有不同接收场的卷积层,进一步增强了网络跨多个尺度提取特征的能力。在Drions-DB和Drishti-GS数据集上,平均mIoU值分别为0.9383和0.9629,推断时间分别为45 ms和40 ms。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Biomedical Engineering: Applications, Basis and Communications
Biomedical Engineering: Applications, Basis and Communications Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
1.50
自引率
11.10%
发文量
36
审稿时长
4 months
期刊介绍: Biomedical Engineering: Applications, Basis and Communications is an international, interdisciplinary journal aiming at publishing up-to-date contributions on original clinical and basic research in the biomedical engineering. Research of biomedical engineering has grown tremendously in the past few decades. Meanwhile, several outstanding journals in the field have emerged, with different emphases and objectives. We hope this journal will serve as a new forum for both scientists and clinicians to share their ideas and the results of their studies. Biomedical Engineering: Applications, Basis and Communications explores all facets of biomedical engineering, with emphasis on both the clinical and scientific aspects of the study. It covers the fields of bioelectronics, biomaterials, biomechanics, bioinformatics, nano-biological sciences and clinical engineering. The journal fulfils this aim by publishing regular research / clinical articles, short communications, technical notes and review papers. Papers from both basic research and clinical investigations will be considered.
期刊最新文献
CORRELATION OF POINCARE PLOT DERIVED STRESS SCORE AND HEART RATE VARIABILITY PARAMETERS IN THE ASSESSMENT OF CORONARY ARTERY DISEASE HEURISTIC-ASSISTED ADAPTIVE HYBRID DEEP LEARNING MODEL WITH FEATURE SELECTION FOR EPILEPSY DETECTION USING EEG SIGNALS MAGNETIC RESONANCE IMAGE DENOIZING USING A DUAL-CHANNEL DISCRIMINATIVE DENOIZING NETWORK PREDICTION OF EPILEPSY BASED ON EEMD AND LSSVM DOUBLE CLASSIFICATION FILTER SELECTION FOR REMOVING NOISE FROM CT SCAN IMAGES USING DIGITAL IMAGE PROCESSING ALGORITHM
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1