Md Abdul Kadir, Hasan Md Tusfiqur Alam, Daniel Sonntag
{"title":"EdgeAL: An Edge Estimation Based Active Learning Approach for OCT Segmentation","authors":"Md Abdul Kadir, Hasan Md Tusfiqur Alam, Daniel Sonntag","doi":"10.48550/arXiv.2307.10745","DOIUrl":null,"url":null,"abstract":"Active learning algorithms have become increasingly popular for training models with limited data. However, selecting data for annotation remains a challenging problem due to the limited information available on unseen data. To address this issue, we propose EdgeAL, which utilizes the edge information of unseen images as {\\it a priori} information for measuring uncertainty. The uncertainty is quantified by analyzing the divergence and entropy in model predictions across edges. This measure is then used to select superpixels for annotation. We demonstrate the effectiveness of EdgeAL on multi-class Optical Coherence Tomography (OCT) segmentation tasks, where we achieved a 99% dice score while reducing the annotation label cost to 12%, 2.3%, and 3%, respectively, on three publicly available datasets (Duke, AROI, and UMN). The source code is available at \\url{https://github.com/Mak-Ta-Reque/EdgeAL}","PeriodicalId":18289,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"3 1","pages":"79-89"},"PeriodicalIF":0.0000,"publicationDate":"2023-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.48550/arXiv.2307.10745","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Active learning algorithms have become increasingly popular for training models with limited data. However, selecting data for annotation remains a challenging problem due to the limited information available on unseen data. To address this issue, we propose EdgeAL, which utilizes the edge information of unseen images as {\it a priori} information for measuring uncertainty. The uncertainty is quantified by analyzing the divergence and entropy in model predictions across edges. This measure is then used to select superpixels for annotation. We demonstrate the effectiveness of EdgeAL on multi-class Optical Coherence Tomography (OCT) segmentation tasks, where we achieved a 99% dice score while reducing the annotation label cost to 12%, 2.3%, and 3%, respectively, on three publicly available datasets (Duke, AROI, and UMN). The source code is available at \url{https://github.com/Mak-Ta-Reque/EdgeAL}
主动学习算法在训练数据有限的模型方面越来越受欢迎。然而,选择数据进行注释仍然是一个具有挑战性的问题,因为在不可见的数据上可用的信息有限。为了解决这个问题,我们提出了edal,它利用未见图像的边缘信息作为测量不确定性的{\it先验}信息。通过分析模型沿边预测的散度和熵来量化不确定性。然后使用该度量来选择用于注释的超像素。我们证明了edal在多类光学相干断层扫描(OCT)分割任务中的有效性,其中我们实现了99% dice score while reducing the annotation label cost to 12%, 2.3%, and 3%, respectively, on three publicly available datasets (Duke, AROI, and UMN). The source code is available at \url{https://github.com/Mak-Ta-Reque/EdgeAL}