Skin sensitizer classification using dual-input machine learning model

IF 0.4 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Chem-Bio Informatics Journal Pub Date : 2020-09-11 DOI:10.1273/cbij.20.54
K. Matsumura
{"title":"Skin sensitizer classification using dual-input machine learning model","authors":"K. Matsumura","doi":"10.1273/cbij.20.54","DOIUrl":null,"url":null,"abstract":"Skin sensitization is an important aspect of occupational and consumer safety. Because of the ban on animal testing for skin sensitization in Europe, in silico approaches to predict skin sensitizers are needed. Recently, several machine learning approaches, such as the gradient boosting decision tree (GBDT) and deep neural networks (DNNs), have been applied to chemical reactivity prediction, showing remarkable accuracy. Herein, we performed a study on DNN- and GBDT-based modeling to investigate their potential for use in predicting skin sensitizers. We separately input two types of chemical properties (physical and structural properties) in the form of one-hot labeled vectors into single- and dual-input models. All the trained dual-input models achieved higher accuracy than single-input models, suggesting that a multi-input machine learning model with different types of chemical properties has excellent potential for skin sensitizer classification.","PeriodicalId":40659,"journal":{"name":"Chem-Bio Informatics Journal","volume":null,"pages":null},"PeriodicalIF":0.4000,"publicationDate":"2020-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chem-Bio Informatics Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1273/cbij.20.54","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 1

Abstract

Skin sensitization is an important aspect of occupational and consumer safety. Because of the ban on animal testing for skin sensitization in Europe, in silico approaches to predict skin sensitizers are needed. Recently, several machine learning approaches, such as the gradient boosting decision tree (GBDT) and deep neural networks (DNNs), have been applied to chemical reactivity prediction, showing remarkable accuracy. Herein, we performed a study on DNN- and GBDT-based modeling to investigate their potential for use in predicting skin sensitizers. We separately input two types of chemical properties (physical and structural properties) in the form of one-hot labeled vectors into single- and dual-input models. All the trained dual-input models achieved higher accuracy than single-input models, suggesting that a multi-input machine learning model with different types of chemical properties has excellent potential for skin sensitizer classification.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于双输入机器学习模型的皮肤致敏剂分类
皮肤致敏是职业和消费者安全的一个重要方面。由于欧洲禁止动物皮肤致敏试验,因此需要用计算机方法来预测皮肤致敏剂。近年来,梯度增强决策树(GBDT)和深度神经网络(dnn)等机器学习方法已被应用于化学反应性预测,并显示出显著的准确性。在此,我们进行了一项基于DNN和gbdt的建模研究,以研究它们在预测皮肤致敏剂方面的潜力。我们分别将两种类型的化学性质(物理性质和结构性质)以单热标记向量的形式输入到单输入和双输入模型中。所有训练的双输入模型都取得了比单输入模型更高的准确率,这表明具有不同类型化学性质的多输入机器学习模型具有良好的皮肤敏化剂分类潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Chem-Bio Informatics Journal
Chem-Bio Informatics Journal BIOCHEMISTRY & MOLECULAR BIOLOGY-
CiteScore
0.60
自引率
0.00%
发文量
8
期刊最新文献
Structural Stability and Binding Ability of SARS-CoV-2 Main Protease with GC376: A Stereoisomeric Covalent Ligand Analysis by FMO calculation Enzyme Kinetics Based on the Concept of Flux Enzyme Kinetics Based on the Concept of Flux Application of Model Core Potentials to Zn- and Mg-containing Metalloproteins in the Fragment Molecular Orbital Method How Beneficial or Threatening is Artificial Intelligence?
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1