Measuring COVID-19 spreading speed through the mean time between infections indicator

Q3 Mathematics Epidemiologic Methods Pub Date : 2022-07-15 DOI:10.1515/em-2022-0106
G. Pena, Ver'onica Moreno, N. R. Barraza
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Abstract

Abstract Objectives To introduce a novel way of measuring the spreading speed of an epidemic. Methods We propose to use the mean time between infections (MTBI) metric obtained from a recently introduced nonhomogeneous Markov stochastic model. Different types of parameter calibration are performed. We estimate the MTBI using data from different time windows and from the whole stage history and compare the results. In order to detect waves and stages in the input data, a preprocessing filtering technique is applied. Results The results of applying this indicator to the COVID-19 reported data of infections from Argentina, Germany and the United States are shown. We find that the MTBI behaves similarly with respect to the different data inputs, whereas the model parameters completely change their behaviour. Evolution over time of the parameters and the MTBI indicator is also shown. Conclusions We show evidence to support the claim that the MTBI is a rather good indicator in order to measure the spreading speed of an epidemic, having similar values whatever the input data size.
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通过平均感染间隔时间指标衡量COVID-19的传播速度
摘要目的介绍一种测量传染病传播速度的新方法。我们建议使用从最近引入的非齐次马尔可夫随机模型中获得的平均感染间隔时间(MTBI)度量。进行了不同类型的参数校准。我们使用来自不同时间窗口和整个阶段历史的数据来估计MTBI,并比较结果。为了检测输入数据中的波和级,采用了预处理滤波技术。结果显示了将该指标应用于阿根廷、德国和美国报告的COVID-19感染数据的结果。我们发现MTBI对于不同数据输入的行为相似,而模型参数完全改变了它们的行为。还显示了参数和MTBI指标随时间的演变。我们展示的证据支持这样一种说法,即MTBI是衡量流行病传播速度的一个相当好的指标,无论输入数据大小如何,它都具有相似的值。
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来源期刊
Epidemiologic Methods
Epidemiologic Methods Mathematics-Applied Mathematics
CiteScore
2.10
自引率
0.00%
发文量
7
期刊介绍: Epidemiologic Methods (EM) seeks contributions comparable to those of the leading epidemiologic journals, but also invites papers that may be more technical or of greater length than what has traditionally been allowed by journals in epidemiology. Applications and examples with real data to illustrate methodology are strongly encouraged but not required. Topics. genetic epidemiology, infectious disease, pharmaco-epidemiology, ecologic studies, environmental exposures, screening, surveillance, social networks, comparative effectiveness, statistical modeling, causal inference, measurement error, study design, meta-analysis
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