{"title":"Natural and Experimental Rewiring of Gene Regulatory Regions.","authors":"Damien J Downes, Jim R Hughes","doi":"10.1146/annurev-genom-112921-010715","DOIUrl":null,"url":null,"abstract":"<p><p>The successful development and ongoing functioning of complex organisms depend on the faithful execution of the genetic code. A critical step in this process is the correct spatial and temporal expression of genes. The highly orchestrated transcription of genes is controlled primarily by <i>cis-</i>regulatory elements: promoters, enhancers, and insulators. The medical importance of this key biological process can be seen by the frequency with which mutations and inherited variants that alter <i>cis-</i>regulatory elements lead to monogenic and complex diseases and cancer. Here, we provide an overview of the methods available to characterize and perturb gene regulatory circuits. We then highlight mechanisms through which regulatory rewiring contributes to disease, and conclude with a perspective on how our understanding of gene regulation can be used to improve human health.</p>","PeriodicalId":48711,"journal":{"name":"Physical Review D","volume":"87 1","pages":"73-97"},"PeriodicalIF":5.3000,"publicationDate":"2022-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical Review D","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1146/annurev-genom-112921-010715","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/4/26 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"ASTRONOMY & ASTROPHYSICS","Score":null,"Total":0}
引用次数: 0
Abstract
The successful development and ongoing functioning of complex organisms depend on the faithful execution of the genetic code. A critical step in this process is the correct spatial and temporal expression of genes. The highly orchestrated transcription of genes is controlled primarily by cis-regulatory elements: promoters, enhancers, and insulators. The medical importance of this key biological process can be seen by the frequency with which mutations and inherited variants that alter cis-regulatory elements lead to monogenic and complex diseases and cancer. Here, we provide an overview of the methods available to characterize and perturb gene regulatory circuits. We then highlight mechanisms through which regulatory rewiring contributes to disease, and conclude with a perspective on how our understanding of gene regulation can be used to improve human health.
期刊介绍:
Physical Review D (PRD) is a leading journal in elementary particle physics, field theory, gravitation, and cosmology and is one of the top-cited journals in high-energy physics.
PRD covers experimental and theoretical results in all aspects of particle physics, field theory, gravitation and cosmology, including:
Particle physics experiments,
Electroweak interactions,
Strong interactions,
Lattice field theories, lattice QCD,
Beyond the standard model physics,
Phenomenological aspects of field theory, general methods,
Gravity, cosmology, cosmic rays,
Astrophysics and astroparticle physics,
General relativity,
Formal aspects of field theory, field theory in curved space,
String theory, quantum gravity, gauge/gravity duality.