Structural aspects of the clustering of curcumin molecules in water. Molecular dynamics computer simulation study

IF 0.9 4区 物理与天体物理 Q4 PHYSICS, CONDENSED MATTER Condensed Matter Physics Pub Date : 2022-06-30 DOI:10.5488/CMP.25.23201
T. Patsahan, O. Pizio
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Abstract

We explore clustering of curcumin molecules in water by using the OPLS-UA model for the enol conformer of curcumin (J. Mol. Liq., 223, 707, 2016) and the SPC-E water model. With this purpose, solutions of 2, 4, 8, 12, 16 and 20 curcumin molecules in 3000 water molecules are studied by using extensive molecular dynamics computer simulations. Radial distributions for the centers of mass of curcumin molecules are evaluated and the running coordination numbers are analyzed. The formation of clusters on time is elucidated. The internal structure of molecules within the cluster is described by using radial distributions of the elements of the curcumin molecule, the orientation descriptors, the order parameter and the radius of gyration. The self-diffusion coefficient of solute molecules in clusters is evaluated. The distribution of water species around clusters is described in detail. A comparison of our findings with computer simulation results of other authors is performed. A possibility to relate predictions of the model with experimental observations is discussed.
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姜黄素分子在水中聚集的结构方面。分子动力学计算机模拟研究
我们利用姜黄素烯醇构象的OPLS-UA模型(J. Mol. Liq., 223, 707, 2016)和SPC-E水模型探索了姜黄素分子在水中的聚类。为此,通过广泛的分子动力学计算机模拟,研究了姜黄素2、4、8、12、16和20分子在3000个水分子中的溶液。评价了姜黄素分子质心的径向分布,分析了运行配位数。阐明了簇在时间上的形成。利用姜黄素分子元素的径向分布、取向描述符、序参量和旋转半径来描述簇内分子的内部结构。计算了溶质分子在团簇中的自扩散系数。详细描述了水种在团簇周围的分布。我们的研究结果与其他作者的计算机模拟结果进行了比较。讨论了将模型预测与实验观测相联系的可能性。
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来源期刊
Condensed Matter Physics
Condensed Matter Physics 物理-物理:凝聚态物理
CiteScore
1.10
自引率
16.70%
发文量
17
审稿时长
1 months
期刊介绍: Condensed Matter Physics contains original and review articles in the field of statistical mechanics and thermodynamics of equilibrium and nonequilibrium processes, relativistic mechanics of interacting particle systems.The main attention is paid to physics of solid, liquid and amorphous systems, phase equilibria and phase transitions, thermal, structural, electric, magnetic and optical properties of condensed matter. Condensed Matter Physics is published quarterly.
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