Mechanism and kinetics of astrophysically relevant gas-phase stereoinversion in glutamic acid: A computational study

Q2 Physics and Astronomy Molecular Astrophysics Pub Date : 2020-03-01 DOI:10.1016/j.molap.2019.100061
Namrata Rani, Vikas
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引用次数: 7

Abstract

Enantiomeric excess of amino acids observed in the meteoritic samples of carbonaceous chondrites has incited many researchers to search for an extra-terrestrial origin of life on prebiotic Earth. However, in a non-catalytic environment, only racemic amino acids are synthesized. This computational quantum-mechanical study explores non-catalytic mechanistic pathways for stereoinversion in proteinogenic L-glutamic acid, which may be observable under gas-phase conditions of interstellar medium (ISM). The multi-step stereoinversion pathways proposed in this study are traced through a global reaction route mapping (GRRM) strategy utilizing density-functional and coupled-cluster theories. Notably, a few of the pathways are observed to proceed through simultaneous intramolecular hydrogen atom and proton transfer as well as through a proton-coupled electron transfer mechanism. The intermediates explored along the stereoinversion pathways resemble ammonium ylide and imine, the key ingredients in Strecker synthesis of amino acids. The thermodynamic and kinetic analysis of the stereoinversion pathways in different temperature regions of ISM are also carried out, predicting the streoinversion to proceed over any dissociation of intermediates and conformers of glutamic acid along the pathways. However, initial step of the pathways involves an unsurmountable energy barrier though the key step responsible for stereoinversion has a very low energy barrier and is predicted to proceeds with significant rates. The work suggests the possibility of observing stereoinversion of glutamic acid in the warmer regions of ISM.

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谷氨酸中天体物理相关气相立体转化的机理和动力学:一个计算研究
在碳质球粒陨石的陨石样本中观察到过量的氨基酸对映体,这激发了许多研究人员在生命起源前的地球上寻找外星生命的起源。然而,在非催化环境下,只有外消旋氨基酸被合成。本计算量子力学研究探索了在星际介质(ISM)气相条件下可观察到的蛋白质生成l -谷氨酸立体转化的非催化机制途径。利用密度泛函和耦合簇理论,采用全局反应路径映射(GRRM)策略,追踪了本研究提出的多步立体反演路径。值得注意的是,观察到一些途径是通过分子内氢原子和质子的同时转移以及通过质子耦合的电子转移机制进行的。沿立体转化途径探索的中间体类似于基化铵和亚胺,它们是氨基酸合成中的关键成分。本文还对ISM在不同温度区域的立体转化途径进行了热力学和动力学分析,预测了立体转化可以在谷氨酸中间产物和构象的任何解离过程中进行。然而,路径的初始步骤涉及一个不可逾越的能量势垒,尽管负责立体反转的关键步骤具有非常低的能量势垒,并且预计将以显着的速率进行。这项工作提出了在ISM温暖地区观察谷氨酸立体反转的可能性。
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Molecular Astrophysics
Molecular Astrophysics ASTRONOMY & ASTROPHYSICS-
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期刊介绍: Molecular Astrophysics is a peer-reviewed journal containing full research articles, selected review articles, and thematic issues. Molecular Astrophysics is a new journal where researchers working in planetary and exoplanetary science, astrochemistry, astrobiology, spectroscopy, physical chemistry and chemical physics can meet and exchange their ideas. Understanding the origin and evolution of interstellar and circumstellar molecules is key to understanding the Universe around us and our place in it and has become a fundamental goal of modern astrophysics. Molecular Astrophysics aims to provide a platform for scientists studying the chemical processes that form and dissociate molecules, and control chemical abundances in the universe, particularly in Solar System objects including planets, moons, and comets, in the atmospheres of exoplanets, as well as in regions of star and planet formation in the interstellar medium of galaxies. Observational studies of the molecular universe are driven by a range of new space missions and large-scale scale observatories opening up. With the Spitzer Space Telescope, the Herschel Space Observatory, the Atacama Large Millimeter/submillimeter Array (ALMA), NASA''s Kepler mission, the Rosetta mission, and more major future facilities such as NASA''s James Webb Space Telescope and various missions to Mars, the journal taps into the expected new insights and the need to bring the various communities together on one platform. The journal aims to cover observational, laboratory as well as computational results in the galactic, extragalactic and intergalactic areas of our universe.
期刊最新文献
Chemistry on Interstellar Grain Surfaces Molecular Emission and Absorption Gas Phase Chemical Processes Diffuse Clouds Molecular Spectroscopy
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