Single Crystal XRD, Hirshfeld Surface, Quantum Chemical and Molecular Docking Studies on Diethyl1-(4-Nitrobenzyl)-4-(4-Nitrophenyl)-2,2-Dioxooctahydro-2-Pyrrolo[2,1-c]1,2Thiazine-1,3-Dicarboxylate: a Novel HIV-1Inhibitor

IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Polycyclic Aromatic Compounds Pub Date : 2024-07-02 DOI:10.1080/10406638.2023.2238864
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Abstract

The single crystal of the title compound Diethyl 1-(4-nitrobenzyl)-4-(4-nitrophenyl)-2,2-dioxooctahydro-2-pyrrolo[2,1-c]1,4thiazine-1,3-dicarboxylate was grown and characterized by single crystal X-ray diffraction technique. Further, Hirshfeld surface, quantum chemical, and molecular docking analyses of the compound were carried out. The title compound was crystallized in a triclinic crystal system with a centrosymmetric space group of P-1 and has one molecule in the asymmetric unit. The stability of the grown crystal structure was confirmed by the C-H…O and π…π interactions. The hydrogen bonding features were analyzed and the prominent intermolecular interactions present in the structure were investigated using Hirshfeld surface analysis. The interaction energy between pairs of the molecule was obtained from Energy Framework analysis. The molecular structure of the title compound was optimized using density functional theory calculation in the ground state and the calculated structural parameters of the compound were compared with the experimental XRD data. Mulliken atomic charge distribution and frontier molecular orbitals analyses were also carried out to validate the reactivity of the title molecule. Molecular docking studies confirm that the title compound has potent inhibitory nature against the human mutant HIV-1 reverse transcriptase protein. Thus, the present study paves the way for the development of a novel HIV-1 drug.

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1-(4-硝基苄基)-4-(4-硝基苯基)-2,2-二氧八氢-2-吡咯并[2,1-c]1,2-噻嗪-1,3-二甲酸二乙酯:一种新型 HIV-1 抑制剂的单晶 XRD、Hirshfeld 表面、量子化学和分子对接研究
生长了标题化合物 1-(4-硝基苄基)-4-(4-硝基苯基)-2,2-二氧代八氢-2-吡咯并[2,1-c]1,4-嗪-1,3-二甲酸二乙酯的单晶,并利用单晶 X 射线衍射技术对其进行了表征。此外,还对该化合物进行了 Hirshfeld 表面、量子化学和分子对接分析。标题化合物在三棱晶系中结晶,具有 P-1 中心对称空间群,不对称单元中有一个分子。C-H...O 和 π...π 相互作用证实了生长出的晶体结构的稳定性。利用 Hirshfeld 表面分析法对氢键特征进行了分析,并对结构中存在的突出分子间相互作用进行了研究。通过能量框架分析获得了分子对之间的相互作用能。利用密度泛函理论计算优化了基态标题化合物的分子结构,并将计算得出的化合物结构参数与实验 XRD 数据进行了比较。此外,还进行了 Mulliken 原子电荷分布和前沿分子轨道分析,以验证标题分子的反应活性。分子对接研究证实,标题化合物对人类突变型 HIV-1 逆转录酶蛋白具有强效抑制作用。因此,本研究为开发新型 HIV-1 药物铺平了道路。
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来源期刊
Polycyclic Aromatic Compounds
Polycyclic Aromatic Compounds 化学-有机化学
CiteScore
3.70
自引率
20.80%
发文量
412
审稿时长
3 months
期刊介绍: The purpose of Polycyclic Aromatic Compounds is to provide an international and interdisciplinary forum for all aspects of research related to polycyclic aromatic compounds (PAC). Topics range from fundamental research in chemistry (including synthetic and theoretical chemistry) and physics (including astrophysics), as well as thermodynamics, spectroscopy, analytical methods, and biology to applied studies in environmental science, biochemistry, toxicology, and industry. Polycyclic Aromatic Compounds has an outstanding Editorial Board and offers a rapid and efficient peer review process, as well as a flexible open access policy.
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