A First Look at the JX Workflow Language

Tim Shaffer, Kyle M. D. Sweeney, Nathaniel Kremer-Herman, D. Thain
{"title":"A First Look at the JX Workflow Language","authors":"Tim Shaffer, Kyle M. D. Sweeney, Nathaniel Kremer-Herman, D. Thain","doi":"10.1109/eScience.2018.00094","DOIUrl":null,"url":null,"abstract":"Scientific workflows are typically expressed as a graph of logical tasks, each one representing a single program along with its input and output files. This poster introduces JX (JSON eXtended), a declarative language that can express complex workloads as an assembly of sub-graphs that can be partitioned in flexible ways. We present a case study of using JX to represent complex workflows for the Lifemapper biodiversity project. We evaluate partitioning approaches across several computing environments, including ND-Condor, IU-Jetstream, and SDSC-Comet, and show that a coarse partitioning results in faster turnaround times, reduced data transfer, and lower master utilization across all three systems.","PeriodicalId":6476,"journal":{"name":"2018 IEEE 14th International Conference on e-Science (e-Science)","volume":"15 1","pages":"352-353"},"PeriodicalIF":0.0000,"publicationDate":"2018-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE 14th International Conference on e-Science (e-Science)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/eScience.2018.00094","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Scientific workflows are typically expressed as a graph of logical tasks, each one representing a single program along with its input and output files. This poster introduces JX (JSON eXtended), a declarative language that can express complex workloads as an assembly of sub-graphs that can be partitioned in flexible ways. We present a case study of using JX to represent complex workflows for the Lifemapper biodiversity project. We evaluate partitioning approaches across several computing environments, including ND-Condor, IU-Jetstream, and SDSC-Comet, and show that a coarse partitioning results in faster turnaround times, reduced data transfer, and lower master utilization across all three systems.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
JX工作流语言简介
科学工作流通常表示为逻辑任务的图,每个任务代表一个程序及其输入和输出文件。这张海报介绍了JX (JSON eXtended),这是一种声明性语言,可以将复杂的工作负载表达为一组子图,这些子图可以以灵活的方式进行分区。我们提出了一个使用JX表示Lifemapper生物多样性项目的复杂工作流程的案例研究。我们评估了跨多个计算环境(包括ND-Condor、IU-Jetstream和SDSC-Comet)的分区方法,并表明,在所有三个系统中,粗分区会导致更快的周转时间、更少的数据传输和更低的主利用率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Occam: Software Environment for Creating Reproducible Research Smart Data Scouting in Professional Soccer: Evaluating Passing Performance Based on Position Tracking Data Improving LBFGS Optimizer in PyTorch: Knowledge Transfer from Radio Interferometric Calibration to Machine Learning Nordic Exome Variant Catalogue a Web Resource for Genomic Data Browsing Survey on Research Software Engineering in the Netherlands
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1