Tim Shaffer, Kyle M. D. Sweeney, Nathaniel Kremer-Herman, D. Thain
{"title":"A First Look at the JX Workflow Language","authors":"Tim Shaffer, Kyle M. D. Sweeney, Nathaniel Kremer-Herman, D. Thain","doi":"10.1109/eScience.2018.00094","DOIUrl":null,"url":null,"abstract":"Scientific workflows are typically expressed as a graph of logical tasks, each one representing a single program along with its input and output files. This poster introduces JX (JSON eXtended), a declarative language that can express complex workloads as an assembly of sub-graphs that can be partitioned in flexible ways. We present a case study of using JX to represent complex workflows for the Lifemapper biodiversity project. We evaluate partitioning approaches across several computing environments, including ND-Condor, IU-Jetstream, and SDSC-Comet, and show that a coarse partitioning results in faster turnaround times, reduced data transfer, and lower master utilization across all three systems.","PeriodicalId":6476,"journal":{"name":"2018 IEEE 14th International Conference on e-Science (e-Science)","volume":"15 1","pages":"352-353"},"PeriodicalIF":0.0000,"publicationDate":"2018-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE 14th International Conference on e-Science (e-Science)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/eScience.2018.00094","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Scientific workflows are typically expressed as a graph of logical tasks, each one representing a single program along with its input and output files. This poster introduces JX (JSON eXtended), a declarative language that can express complex workloads as an assembly of sub-graphs that can be partitioned in flexible ways. We present a case study of using JX to represent complex workflows for the Lifemapper biodiversity project. We evaluate partitioning approaches across several computing environments, including ND-Condor, IU-Jetstream, and SDSC-Comet, and show that a coarse partitioning results in faster turnaround times, reduced data transfer, and lower master utilization across all three systems.