Algorithm for generating irreducible site-occupancy configurations

J. Lian, Hong-Yu Wu, Wei‐Qing Huang, Wangyu Hu, Gui‐Fang Huang
{"title":"Algorithm for generating irreducible site-occupancy configurations","authors":"J. Lian, Hong-Yu Wu, Wei‐Qing Huang, Wangyu Hu, Gui‐Fang Huang","doi":"10.1103/physrevb.102.134209","DOIUrl":null,"url":null,"abstract":"Generating irreducible site-occupancy configurations by taking advantage of crystal symmetry is a ubiquitous method for accelerating of disordered structure prediction, which plays an important role in condensed matter physics and material science. Here, we present a new algorithm for generating irreducible site-occupancy configurations, that works for arbitrary parent cell with any supercell expansion matrix, and for any number of atom types with arbitrary stoichiometry. The new algorithm identifies the symmetrically equivalent configurations by searching the space group operations of underlying lattice and building the equivalent atomic matrix based on it. Importantly, an integer representation of configurations can greatly accelerate the speed of elimination of duplicate configurations, resulting into a linear scale of run time with the number of irreducible configurations that finally found. Moreover, based on our new algorithm, we write the corresponding code named as disorder in FORTRAN programming language, and the performance test results show that the time efficiency of our disorder code is superior to that of other related codes (supercell, enumlib and SOD).","PeriodicalId":8424,"journal":{"name":"arXiv: Computational Physics","volume":"18 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"7","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv: Computational Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1103/physrevb.102.134209","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 7

Abstract

Generating irreducible site-occupancy configurations by taking advantage of crystal symmetry is a ubiquitous method for accelerating of disordered structure prediction, which plays an important role in condensed matter physics and material science. Here, we present a new algorithm for generating irreducible site-occupancy configurations, that works for arbitrary parent cell with any supercell expansion matrix, and for any number of atom types with arbitrary stoichiometry. The new algorithm identifies the symmetrically equivalent configurations by searching the space group operations of underlying lattice and building the equivalent atomic matrix based on it. Importantly, an integer representation of configurations can greatly accelerate the speed of elimination of duplicate configurations, resulting into a linear scale of run time with the number of irreducible configurations that finally found. Moreover, based on our new algorithm, we write the corresponding code named as disorder in FORTRAN programming language, and the performance test results show that the time efficiency of our disorder code is superior to that of other related codes (supercell, enumlib and SOD).
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
生成不可约场地占用配置的算法
利用晶体对称性生成不可约的占位构型是一种普遍存在的加速无序结构预测的方法,在凝聚态物理和材料科学中发挥着重要作用。在这里,我们提出了一种新的算法,用于产生不可约的位置占用配置,该算法适用于具有任何超级单体膨胀矩阵的任意亲本细胞,以及具有任意化学计量的任意数量的原子类型。该算法通过搜索底层晶格的空间群运算并在此基础上构建等效原子矩阵来识别对称等价构型。重要的是,配置的整数表示可以大大加快重复配置的消除速度,从而使最终发现的不可约配置的数量在运行时间上呈线性比例。在此基础上,用FORTRAN编程语言编写了相应的无序代码,性能测试结果表明,无序代码的时间效率优于其他相关代码(supercell、enumlib和SOD)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Modeling and computation for non-equilibrium gas dynamics: Beyond single relaxation time kinetic models Space-time computation and visualization of the electromagnetic fields and potentials generated by moving point charges Sparse Gaussian process potentials: Application to lithium diffusivity in superionic conducting solid electrolytes Reduced ionic diffusion by the dynamic electron–ion collisions in warm dense hydrogen HL-LHC Computing Review: Common Tools and Community Software
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1