parGeMSLR: A parallel multilevel Schur complement low-rank preconditioning and solution package for general sparse matrices

IF 2 4区 计算机科学 Q2 COMPUTER SCIENCE, THEORY & METHODS Parallel Computing Pub Date : 2022-10-01 DOI:10.1016/j.parco.2022.102956
Tianshi Xu , Vassilis Kalantzis , Ruipeng Li , Yuanzhe Xi , Geoffrey Dillon , Yousef Saad
{"title":"parGeMSLR: A parallel multilevel Schur complement low-rank preconditioning and solution package for general sparse matrices","authors":"Tianshi Xu ,&nbsp;Vassilis Kalantzis ,&nbsp;Ruipeng Li ,&nbsp;Yuanzhe Xi ,&nbsp;Geoffrey Dillon ,&nbsp;Yousef Saad","doi":"10.1016/j.parco.2022.102956","DOIUrl":null,"url":null,"abstract":"<div><p>This paper discusses <span>parGeMSLR</span><span><span>, a C++/MPI software library for the solution of sparse systems of linear algebraic equations via preconditioned </span>Krylov subspace methods<span> in distributed-memory computing environments. The preconditioner implemented in </span></span><span>parGeMSLR</span><span> is based on algebraic domain decomposition and partitions the symmetrized adjacency graph recursively into several non-overlapping partitions via a </span><span><math><mi>p</mi></math></span>-way vertex separator, where <span><math><mi>p</mi></math></span><span> is an integer multiple of the total number of MPI processes. From a numerical perspective, </span><span>parGeMSLR</span><span><span> builds a Schur complement approximate inverse preconditioner as the sum between the </span>matrix inverse<span> of the interface coupling matrix and a low-rank correction term. To reduce the cost associated with the computation of the approximate inverse matrices, </span></span><span>parGeMSLR</span> exploits a multilevel partitioning of the algebraic domain. The <span>parGeMSLR</span> library is implemented on top of the Message Passing Interface and can solve both real and complex linear systems. Furthermore, <span>parGeMSLR</span><span> can take advantage of hybrid computing environments with in-node access to one or more Graphics Processing Units. Finally, the parallel efficiency (weak and strong scaling) of </span><span>parGeMSLR</span><span> is demonstrated on a few model problems arising from discretizations<span> of 3D Partial Differential Equations.</span></span></p></div>","PeriodicalId":54642,"journal":{"name":"Parallel Computing","volume":"113 ","pages":"Article 102956"},"PeriodicalIF":2.0000,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Parallel Computing","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167819122000497","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, THEORY & METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

This paper discusses parGeMSLR, a C++/MPI software library for the solution of sparse systems of linear algebraic equations via preconditioned Krylov subspace methods in distributed-memory computing environments. The preconditioner implemented in parGeMSLR is based on algebraic domain decomposition and partitions the symmetrized adjacency graph recursively into several non-overlapping partitions via a p-way vertex separator, where p is an integer multiple of the total number of MPI processes. From a numerical perspective, parGeMSLR builds a Schur complement approximate inverse preconditioner as the sum between the matrix inverse of the interface coupling matrix and a low-rank correction term. To reduce the cost associated with the computation of the approximate inverse matrices, parGeMSLR exploits a multilevel partitioning of the algebraic domain. The parGeMSLR library is implemented on top of the Message Passing Interface and can solve both real and complex linear systems. Furthermore, parGeMSLR can take advantage of hybrid computing environments with in-node access to one or more Graphics Processing Units. Finally, the parallel efficiency (weak and strong scaling) of parGeMSLR is demonstrated on a few model problems arising from discretizations of 3D Partial Differential Equations.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
parGeMSLR:一般稀疏矩阵的并行多级Schur补低秩预处理和解包
本文讨论了一个c++ /MPI软件库parGeMSLR,它用于在分布式存储计算环境下用预条件Krylov子空间方法求解线性代数方程的稀疏系统。parGeMSLR中实现的预条件基于代数域分解,通过p路顶点分隔符将对称邻接图递归划分为多个不重叠的分区,其中p是MPI进程总数的整数倍。从数值角度来看,parGeMSLR将Schur补近似逆预条件构建为界面耦合矩阵逆与低秩校正项的和。为了减少与近似逆矩阵的计算相关的成本,parGeMSLR利用了代数域的多级划分。parGeMSLR库是在消息传递接口之上实现的,可以解决真实和复杂的线性系统。此外,parGeMSLR可以利用节点内访问一个或多个图形处理单元的混合计算环境。最后,在三维偏微分方程离散化引起的几个模型问题上,证明了parGeMSLR的并行效率(弱标度和强标度)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Parallel Computing
Parallel Computing 工程技术-计算机:理论方法
CiteScore
3.50
自引率
7.10%
发文量
49
审稿时长
4.5 months
期刊介绍: Parallel Computing is an international journal presenting the practical use of parallel computer systems, including high performance architecture, system software, programming systems and tools, and applications. Within this context the journal covers all aspects of high-end parallel computing from single homogeneous or heterogenous computing nodes to large-scale multi-node systems. Parallel Computing features original research work and review articles as well as novel or illustrative accounts of application experience with (and techniques for) the use of parallel computers. We also welcome studies reproducing prior publications that either confirm or disprove prior published results. Particular technical areas of interest include, but are not limited to: -System software for parallel computer systems including programming languages (new languages as well as compilation techniques), operating systems (including middleware), and resource management (scheduling and load-balancing). -Enabling software including debuggers, performance tools, and system and numeric libraries. -General hardware (architecture) concepts, new technologies enabling the realization of such new concepts, and details of commercially available systems -Software engineering and productivity as it relates to parallel computing -Applications (including scientific computing, deep learning, machine learning) or tool case studies demonstrating novel ways to achieve parallelism -Performance measurement results on state-of-the-art systems -Approaches to effectively utilize large-scale parallel computing including new algorithms or algorithm analysis with demonstrated relevance to real applications using existing or next generation parallel computer architectures. -Parallel I/O systems both hardware and software -Networking technology for support of high-speed computing demonstrating the impact of high-speed computation on parallel applications
期刊最新文献
Towards resilient and energy efficient scalable Krylov solvers Seesaw: A 4096-bit vector processor for accelerating Kyber based on RISC-V ISA extensions Editorial Board FastPTM: Fast weights loading of pre-trained models for parallel inference service provisioning Distributed consensus-based estimation of the leading eigenvalue of a non-negative irreducible matrix
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1