Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer.

IF 2.6 Q3 ONCOLOGY Molecular and Cellular Oncology Pub Date : 2023-01-01 DOI:10.1080/23723556.2023.2188858
Dalila Luciola Zanette, Karoline Brito Caetano Andrade Coelho, Eneas de Carvalho, Mateus Nobrega Aoki, Jeanine Marie Nardin, Larissa Araújo Lalli, Rafael Dos Santos Bezerra, Marta Giovanetti, Victória Simionatto Zucherato, Gabriel Montenegro de Campos, Jardelina de Souza Todão Bernardino, Vincent Louis Viala, Massimo Ciccozzi, Luiz Carlos Junior Alcantara, Sandra Coccuzzo Sampaio, Maria Carolina Elias, Simone Kashima, Dimas Tadeu Covas, Svetoslav Nanev Slavov
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Abstract

Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients with prostate cancer. Blood samples were obtained from 49 male patients with primary prostate adenocarcinoma. Thirty blood donors were included as a control group. The obtained next-generation sequencing data were analyzed using a bioinformatic pipeline for virus metagenomics. Viral reads with higher abundance were assembled in contigs and analyzed taxonomically. Viral agents of interest were also confirmed by qPCR. Anelloviruses and the Human Pegivirus-1 (HPgV-1) were the most abundant component of plasma metavirome. Clinically important viruses like hepatitis C virus (HCV), cytomegalovirus and human adenovirus type C were also identified. In comparison, the blood donor virome was exclusively composed of torque teno virus types (TTV) types. The performed HPgV-1 and HCV phylogeny revealed that these viruses belong to commonly detected in Brazil genotypes. Our study sheds light on the plasma viral abundance in patients with prostatic cancer. The obtained viral diversity allowed us to separate the patients and controls, probably suggesting that malignant processes may influence virome composition. More complex and multiple approach investigations are necessary to examine the likely causal relationship between metavirome and its nvolvement in prostate cancer.

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巴西前列腺癌患者血浆病毒的宏基因组研究。
越来越多的证据表明,转移病毒的改变可能与恶性细胞转化的风险增加有关。考虑到病毒被认为是诱发前列腺癌的因素。本研究的目的是检查前列腺癌患者血浆中转移病毒的组成。本文采集了49例男性原发性前列腺癌患者的血液样本。30名献血者作为对照组。获得的下一代测序数据使用病毒宏基因组学生物信息学管道进行分析。将高丰度的病毒序列组装成contigs并进行分类分析。qPCR也证实了感兴趣的病毒因子。Anelloviruses和Human Pegivirus-1 (HPgV-1)是血浆病毒组中最丰富的成分。临床重要的病毒如丙型肝炎病毒(HCV)、巨细胞病毒和C型人腺病毒也被鉴定出来。相比之下,献血者病毒组完全由扭力病毒型(TTV)型组成。HPgV-1和HCV的系统发育表明,这两种病毒属于巴西常见的基因型。我们的研究揭示了前列腺癌患者的血浆病毒丰度。获得的病毒多样性使我们能够将患者和对照组分开,这可能表明恶性过程可能影响病毒组成。需要更复杂和多途径的研究来检验转移病毒及其参与前列腺癌之间可能的因果关系。
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来源期刊
Molecular and Cellular Oncology
Molecular and Cellular Oncology Biochemistry, Genetics and Molecular Biology-Cancer Research
CiteScore
3.20
自引率
0.00%
发文量
18
期刊介绍: For a long time, solid neoplasms have been viewed as relatively homogeneous entities composed for the most part of malignant cells. It is now clear that tumors are highly heterogeneous structures that evolve in the context of intimate interactions between cancer cells and endothelial, stromal as well as immune cells. During the past few years, experimental and clinical oncologists have witnessed several conceptual transitions of this type. Molecular and Cellular Oncology (MCO) emerges within this conceptual framework as a high-profile forum for the publication of fundamental, translational and clinical research on cancer. The scope of MCO is broad. Submissions dealing with all aspects of oncogenesis, tumor progression and response to therapy will be welcome, irrespective of whether they focus on solid or hematological neoplasms. MCO has gathered leading scientists with expertise in multiple areas of cancer research and other fields of investigation to constitute a large, interdisciplinary, Editorial Board that will ensure the quality of articles accepted for publication. MCO will publish Original Research Articles, Brief Reports, Reviews, Short Reviews, Commentaries, Author Views (auto-commentaries) and Meeting Reports dealing with all aspects of cancer research.
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