A Nano-QSTR model to predict nano-cytotoxicity: an approach using human lung cells data.

IF 7.2 1区 医学 Q1 TOXICOLOGY Particle and Fibre Toxicology Pub Date : 2023-05-22 DOI:10.1186/s12989-023-00530-0
João Meneses, Michael González-Durruthy, Eli Fernandez-de-Gortari, Alla P Toropova, Andrey A Toropov, Ernesto Alfaro-Moreno
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Abstract

Background: The widespread use of new engineered nanomaterials (ENMs) in industries such as cosmetics, electronics, and diagnostic nanodevices, has been revolutionizing our society. However, emerging studies suggest that ENMs present potentially toxic effects on the human lung. In this regard, we developed a machine learning (ML) nano-quantitative-structure-toxicity relationship (QSTR) model to predict the potential human lung nano-cytotoxicity induced by exposure to ENMs based on metal oxide nanoparticles.

Results: Tree-based learning algorithms (e.g., decision tree (DT), random forest (RF), and extra-trees (ET)) were able to predict ENMs' cytotoxic risk in an efficient, robust, and interpretable way. The best-ranked ET nano-QSTR model showed excellent statistical performance with R2 and Q2-based metrics of 0.95, 0.80, and 0.79 for training, internal validation, and external validation subsets, respectively. Several nano-descriptors linked to the core-type and surface coating reactivity properties were identified as the most relevant characteristics to predict human lung nano-cytotoxicity.

Conclusions: The proposed model suggests that a decrease in the ENMs diameter could significantly increase their potential ability to access lung subcellular compartments (e.g., mitochondria and nuclei), promoting strong nano-cytotoxicity and epithelial barrier dysfunction. Additionally, the presence of polyethylene glycol (PEG) as a surface coating could prevent the potential release of cytotoxic metal ions, promoting lung cytoprotection. Overall, the current work could pave the way for efficient decision-making, prediction, and mitigation of the potential occupational and environmental ENMs risks.

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纳米qstr模型预测纳米细胞毒性:一种使用人类肺细胞数据的方法。
背景:新型工程纳米材料(enm)在化妆品、电子和诊断纳米器件等行业的广泛应用,已经彻底改变了我们的社会。然而,新出现的研究表明,enm对人体肺部有潜在的毒性作用。在这方面,我们开发了一个机器学习(ML)纳米定量-结构-毒性关系(QSTR)模型,以预测暴露于基于金属氧化物纳米颗粒的enm诱导的潜在人体肺部纳米细胞毒性。结果:基于树的学习算法(如决策树(DT)、随机森林(RF)和额外树(ET))能够以有效、稳健和可解释的方式预测enm的细胞毒性风险。排名最好的ET纳米qstr模型在训练子集、内部验证子集和外部验证子集上的R2和基于q2的指标分别为0.95、0.80和0.79,显示出优异的统计性能。与核心类型和表面涂层反应性有关的几个纳米描述符被确定为预测人类肺纳米细胞毒性的最相关特征。结论:所提出的模型表明,enm直径的减小可以显著增加其进入肺亚细胞区室(如线粒体和细胞核)的潜在能力,促进强纳米细胞毒性和上皮屏障功能障碍。此外,聚乙二醇(PEG)作为表面涂层的存在可以防止细胞毒性金属离子的潜在释放,促进肺细胞保护。总的来说,目前的工作可以为有效的决策、预测和减轻潜在的职业和环境能源管理风险铺平道路。
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来源期刊
CiteScore
15.90
自引率
4.00%
发文量
69
审稿时长
6 months
期刊介绍: Particle and Fibre Toxicology is an online journal that is open access and peer-reviewed. It covers a range of disciplines such as material science, biomaterials, and nanomedicine, focusing on the toxicological effects of particles and fibres. The journal serves as a platform for scientific debate and communication among toxicologists and scientists from different fields who work with particle and fibre materials. The main objective of the journal is to deepen our understanding of the physico-chemical properties of particles, their potential for human exposure, and the resulting biological effects. It also addresses regulatory issues related to particle exposure in workplaces and the general environment. Moreover, the journal recognizes that there are various situations where particles can pose a toxicological threat, such as the use of old materials in new applications or the introduction of new materials altogether. By encompassing all these disciplines, Particle and Fibre Toxicology provides a comprehensive source for research in this field.
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