A Novel PMVK Variant Associated with Familial Porokeratosis.

IF 1.1 4区 生物学 Q4 GENETICS & HEREDITY Human Heredity Pub Date : 2023-01-01 Epub Date: 2023-06-14 DOI:10.1159/000531120
Wenjing Zhang, Xinmiao Nie, Lei Shi, Fengmin Shao, Lihua Cao
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引用次数: 0

Abstract

Background: Porokeratosis is a rare chronic progressive hypokeratotic skin disease, possibly related to the mevalonate pathway. Variations in four enzymes, including phosphomevalonate kinase (PMVK) may alter this pathway, ultimately leading to porokeratosis.

Objectives: The aim of the study was to identify the causative gene variant of porokeratosis in a Chinese family and investigate its population frequency and pathogenicity.

Method: In this study, Sanger sequencing was used to identify the gene variant causative of porokeratosis; its population frequency was investigated by polymerase chain reaction-restriction fragment length polymorphism in 4 patients and three normal individuals as well as in 100 normal unrelated controls; finally, the pathogenicity of the mutation and the associated structural changes were predicted.

Results: We identified a novel heterozygous missense variant, c.207G>T (p. Lys69Asn) in the PMVK gene. This variant was found in all patients but not in the normal individuals in this family or in the 100 controls. In silico analysis indicated that the variant was pathogenic; p.Lys69Asn changed the length of the α-helix and the hydrogen bond pattern compared with the wild-type protein.

Conclusions: The novel variant c.207G>T (p. Lys69Asn) in the PMVK gene was the causative variant in this porokeratosis family. This finding provides further evidence for the genetic basis of this disease.

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一种与家族性角化病有关的新型 PMVK 变体
背景:角化病是一种罕见的慢性进行性角化不全皮肤病,可能与甲羟戊酸途径有关。包括磷酸甲羟戊酸激酶(PMVK)在内的四种酶的变异可能会改变这一途径,最终导致角化病:本研究的目的是在一个中国家族中确定 porokeratosis 的致病基因变异,并调查其人群频率和致病性:方法:本研究采用桑格测序法鉴定了导致角化病的基因变异,并通过聚合酶链式反应-限制性片段长度多态性研究了该变异在4名患者、3名正常人和100名正常非亲属对照中的人群频率,最后预测了该变异的致病性和相关结构变化:结果:我们在 PMVK 基因中发现了一个新的杂合错义变异,c.207G>T (p. Lys69Asn)。该变异在所有患者中均有发现,但在该家族的正常人和 100 名对照者中却没有发现。硅学分析表明,该变体具有致病性;与野生型蛋白相比,p.Lys69Asn 改变了 α-螺旋的长度和氢键模式:结论:PMVK基因中的新型变异体c.207G>T(p. Lys69Asn)是这个角化病家族的致病变异体。这一发现为该疾病的遗传基础提供了进一步的证据。
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来源期刊
Human Heredity
Human Heredity 生物-遗传学
CiteScore
2.50
自引率
0.00%
发文量
12
审稿时长
>12 weeks
期刊介绍: Gathering original research reports and short communications from all over the world, ''Human Heredity'' is devoted to methodological and applied research on the genetics of human populations, association and linkage analysis, genetic mechanisms of disease, and new methods for statistical genetics, for example, analysis of rare variants and results from next generation sequencing. The value of this information to many branches of medicine is shown by the number of citations the journal receives in fields ranging from immunology and hematology to epidemiology and public health planning, and the fact that at least 50% of all ''Human Heredity'' papers are still cited more than 8 years after publication (according to ISI Journal Citation Reports). Special issues on methodological topics (such as ‘Consanguinity and Genomics’ in 2014; ‘Analyzing Rare Variants in Complex Diseases’ in 2012) or reviews of advances in particular fields (‘Genetic Diversity in European Populations: Evolutionary Evidence and Medical Implications’ in 2014; ‘Genes and the Environment in Obesity’ in 2013) are published every year. Renowned experts in the field are invited to contribute to these special issues.
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